Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4431 215 8e-52 seq277 181 2e-41 seq3421 147 3e-31 seq6474 100 4e-17 >seq4431 Length=18034 Score = 215 bits (238), Expect = 8e-52 Identities = 208/267 (78%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | |||||| || ||||||||||||||||||||||| |||||| Sbjct 3494 GCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACCAAGCCGGCTATC 3435 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||||||||||||||| || ||| ||||||| || |||| ||||| | | Sbjct 3434 CGTCGTCTCGCTCGTCGTGGTGGAGTGAAACGTATCTCTGGTCTGATCTACGAAGAAACT 3375 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | ||||| ||| || |||| ||||||| || ||| |||| Sbjct 3374 CGTGGAGTTCTGAAGGTGTTCCTTGAGAATGTGATCCGTGATGCTGTCACCTACTGCGAG 3315 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | ||||| |||||| | ||||| | ||||| || ||||| |||| || Sbjct 3314 CATGCCAAGAGAAAGACCGTCACCGCTATGGACGTTGTCTACGCTCTGAAATGTCAGGGA 3255 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | |||||||| ||| | ||| Sbjct 3254 CGTACTCTGTATGGTTTCGGAGGATAA 3228 >seq277 Length=91556 Score = 181 bits (200), Expect = 2e-41 Identities = 201/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| || ||||| | | ||||| || |||||||||||||| || |||||||| || Sbjct 53813 GCTAAACGCCATCGTAAAGTACTTCGTGACAACATCCAAGGAATTACGAAGCCAGCAATT 53754 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || | ||||||||||| |||||| | ||||| || |||| ||||||| Sbjct 53753 CGACGTCTAGCCAGGCGTGGTGGAGTGAAGCGTATTTCTGGTCTGATCTACGAAGAGACA 53694 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||| | ||| | | | ||||| | ||||||| || |||| || Sbjct 53693 CGTGGTGTACTGAAAGTATTCTTGGAAAATGTTATTCGTGATGCTGTCACCTATTGTGAA 53634 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||||| ||||||||||| |||||||| | || ||||| |||||||||| || Sbjct 53633 CATGCAAAACGAAAGACTGTCACTGCCATGGATGTTGTTTATGCTCTGAAACGTCAGGGA 53574 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| |||| ||||| ||| | |||| Sbjct 53573 CGTACTCTTTACGGTTTCGGAGGCTAAT 53546 >seq3421 Length=23676 Score = 147 bits (162), Expect = 3e-31 Identities = 194/267 (73%), Gaps = 9/267 (3%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | |||||| || | |||||||| ||||||||||||| Sbjct 360 GCCAAGCGCCATCGCAAAGTTCTTCGTGACAGCATCCAAG-------CAAGCCAGCTATC 412 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||| ||||| ||||||| |||||| || |||| | | ||||| | Sbjct 413 CGTCGTCTCGCTTGTCGTTGTGGAGTGAAGCGTATCCCTGGTCCTACCCACGAAGAAGCT 472 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | || || ||| || |||| || |||| | ||| |||||| Sbjct 473 CGTGGAGTTCTGAAGTTGTTACTTGAGAATGTGATCCGTGGTGCTGT-CAC-CCACCGAG 530 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | ||||| |||||| | ||||| | ||||| || ||||||||||||| Sbjct 531 CATGCCAAGAGAAAGACCGTCACCGCTATGGACGTTGTCTACGCTCTGAAACGTCAAGGA 590 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| ||| | ||| Sbjct 591 CGTACTCTGTACGGTTTCGGAGGATAA 617 >seq6474 Length=9875 Score = 100 bits (110), Expect = 4e-17 Identities = 168/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || ||||| ||||| |||||||| || | | |||||| |||| || |||| |||| Sbjct 4182 CGCGACAACATTCAAGGCATCACCAAAACAACAGTTCGTCGTTTGGCACGACGTGCTGGA 4123 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||| | |||| || |||||||||||| ||| | ||| | |||| || || Sbjct 4122 GTTCGGCGTATTTCTGAGCTGATCTATGAAGAGACTCGAGCGGTTCTAAAGAGATTTCTT 4063 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 || | ||| | ||| | ||| ||||||||| | ||| | || ||||| Sbjct 4062 GAGGAACTCATCAGAGCCGCTGTTATCTACTGCGAGCACGCCAGACGCACCACCGTCACA 4003 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 |||||| ||||||| || | || || ||||| || | |||||||||| ||| || Sbjct 4002 GTTATGGATGTCGTCTACGCCCTCAAGCGACAAGGGCGCACCGTTTATGGTTTCGGAGGT 3943 Query 16697 TAA 16699 ||| Sbjct 3942 TAA 3940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79052412726639