Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5978 96.9 4e-15 seq3288 95.1 2e-14 >seq5978 Length=11568 Score = 96.9 bits (106), Expect = 4e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATA 33860 ||| |||||||| ||||||||||| ||| | || |||||||| | | ||||||||||| Sbjct 5779 TACCTCTTCCACAGTCCAAAATGACGCCACAGCTTTTTTATAGAAGGCCCAGATGTCATG 5838 Query 33861 ATATTGGATTGGGAAAATAACAAATCTATTTGGATT 33896 || | ||| |||||||| ||||||||||| ||||| Sbjct 5839 GTACTTGATCGGGAAAATGACAAATCTATTCGGATT 5874 Score = 82.4 bits (90), Expect = 1e-10 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 33591 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33650 |||||||||||| || ||||| ||||| ||||| || ||||| ||||| || ||| ||| Sbjct 5423 ACTATACATTTCAGAGTGAATATTTTCGATGGCAATTTGAAAACCGTAAAAGAATCGAGC 5482 Query 33651 CTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAA 33690 ||| | || || |||||| | |||| |||||| || || Sbjct 5483 CTCAGGAACTTGAACTTCTTTGGAAAAGCGTTCCACCTAA 5522 >seq3288 Length=24717 Score = 95.1 bits (104), Expect = 2e-14 Identities = 189/275 (69%), Gaps = 4/275 (1%) Strand=Plus/Minus Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376 ||| |||| |||||||||||||| ||| || || | |||| || || || || || || Sbjct 15808 AATGTCAGCATGCCACGGTTCCAGGTAGATTGCGAACGCTCCCGGGCGCTTATTACCGCC 15749 Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436 || || | ||| | || |||||||| || || | | ||| ||||| | || || || Sbjct 15748 TTGGTCCACGTAACGCGCAGTGTTATTGTACACGCGAAGCATCGGAATCAAGCCATTGGA 15689 Query 63437 TATACCATTGGTACCGGAGATATAGC-TTCCACTGGCACGAATATTACTAATTGATAGAC 63495 | | ||||| || || | || ||| |||| | || | |||||| | |||| Sbjct 15688 TGTGCCATTTGTTCCCGCAAT-CAGCGATCCAGTTGCTCTGATATTATGCACGTTCAGAC 15630 Query 63496 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCT 63555 ||||||| || || | || ||||| | ||| ||| |||| || ||||| || || || Sbjct 15629 CTATTCCGCCGGCACTCTTCGAGATCAGTGCACATTGTTTCAATGTGTCGTAAATGCCAG 15570 Query 63556 CTATGCTATCATCGATCA-TGTTAAGTAGAAAACA 63589 | || ||| ||| ||| |||||| || ||||| Sbjct 15569 CAATCGAATCCTCGCTCATTGTTAA-AAGGAAACA 15536 Score = 93.3 bits (102), Expect = 5e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 63972 GTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGT 64031 |||| |||||| | |||||||| || ||||| || ||||||||||||||||| ||||| Sbjct 14811 GTTTTCTTGTGCAAGTTTGATACAGCAATTCTAGCCGCTAGAATGGCATAATCGGGATGC 14752 Query 64032 TGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACT 64091 || || || | || || |||| || || | |||||| || || || | |||| Sbjct 14751 TGAGTGGTCATCGAAGCAGCAGTTTCAGCAGCTAAGTTGTCCAGCTCCACTGTGGATACT 14692 Query 64092 CCATTATATATTCCTTGAATAACCTTCATAGCTA 64125 || || || | ||| |||||||||||| |||| Sbjct 14691 CCTTTGTAGAGTCCAGCAATAACCTTCATCGCTA 14658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622753128586680