Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq8777 87.8 1e-12 seq442 87.8 1e-12 seq652 86.0 4e-12 seq344 84.2 1e-11 seq10422 82.4 5e-11 seq8765 82.4 5e-11 >seq8777 Length=4537 Score = 87.8 bits (96), Expect = 1e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 19960 GTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTAGC 20019 || ||||||| ||||||||||||||||| |||||||||||||||| ||| | |||||||| Sbjct 3233 GTGCTTTTCACCTTTCCCTCACGGTACTGGTTCGCTATCGGTCTCCCGGGAGTATTTAGC 3292 Query 20020 CTT 20022 ||| Sbjct 3293 CTT 3295 >seq442 Length=77255 Score = 87.8 bits (96), Expect = 1e-12 Identities = 59/66 (89%), Gaps = 5/66 (8%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 12058 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 12117 Query 25957 TAATCC 25962 |||||| Sbjct 12118 TAATCC 12123 >seq652 Length=66343 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| || | Sbjct 31583 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCTTCACAGTACTTGTTTGCTATCGAAATCAC 31524 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| || Sbjct 31523 CTTTATATTTAGCCGTA 31507 >seq344 Length=84033 Score = 84.2 bits (92), Expect = 1e-11 Identities = 71/86 (83%), Gaps = 5/86 (6%) Strand=Plus/Plus Query 19941 TCATTT---CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTAT 19997 |||||| |||||||||||||||||||| ||||||||| |||| |||| ||| ||||| Sbjct 7169 TCATTTAAACTCTCTCTTCAAAGTTCTTTGCAACTTTCCTTCACAGTAC--GTTTGCTAT 7226 Query 19998 CGGTCTCGCGGTAATATTTAGCCTTA 20023 || ||||| ||||||||||||| Sbjct 7227 CGAATTCGCGCCTATATTTAGCCTTA 7252 >seq10422 Length=2666 Score = 82.4 bits (90), Expect = 5e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 19960 GTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTAGC 20019 || ||||||| ||||||||||||||||| |||||||||||||||| ||||| | ||||| Sbjct 1333 GTGCTTTTCACCTTTCCCTCACGGTACTCGTTCGCTATCGGTCTCACGGTAGTGCTTAGC 1392 Query 20020 CTT 20022 ||| Sbjct 1393 CTT 1395 >seq8765 Length=4561 Score = 82.4 bits (90), Expect = 5e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 19960 GTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTAGC 20019 |||||||||| |||||| |||| |||||||||||||||||||||| | | | |||||||| Sbjct 1957 GTTCTTTTCACCTTTCCTTCACAGTACTTGTTCGCTATCGGTCTCTCAGGAGTATTTAGC 1898 Query 20020 CTT 20022 ||| Sbjct 1897 CTT 1895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334845460102013