Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3288 104 3e-17 seq5978 91.5 2e-13 >seq3288 Length=24717 Score = 104 bits (114), Expect = 3e-17 Identities = 191/275 (69%), Gaps = 4/275 (1%) Strand=Plus/Minus Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 ||| |||| |||||||||||||| ||| || || | |||| || || || || || || Sbjct 15808 AATGTCAGCATGCCACGGTTCCAGGTAGATTGCGAACGCTCCCGGGCGCTTATTACCGCC 15749 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 || || | ||| | || |||||||| || || | | ||| ||||| | |||||||| Sbjct 15748 TTGGTCCACGTAACGCGCAGTGTTATTGTACACGCGAAGCATCGGAATCAAGCCATTGGA 15689 Query 63292 TGTACCATTGGTCCCTGAGATATAGC-TTCCACTGGCACGAATATTACTAATTGATAGAC 63350 ||| ||||| || || | || ||| |||| | || | |||||| | |||| Sbjct 15688 TGTGCCATTTGTTCCCGCAAT-CAGCGATCCAGTTGCTCTGATATTATGCACGTTCAGAC 15630 Query 63351 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 63410 ||||||| || || | || ||||| | ||| ||| |||| || || || || ||||| Sbjct 15629 CTATTCCGCCGGCACTCTTCGAGATCAGTGCACATTGTTTCAATGTGTCGTAAATGCCAG 15570 Query 63411 CTATACTATCATCCATCA-TGTTAAGTAGAAAACA 63444 | || ||| || ||| |||||| || ||||| Sbjct 15569 CAATCGAATCCTCGCTCATTGTTAA-AAGGAAACA 15536 Score = 84.2 bits (92), Expect = 3e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 63827 GTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGT 63886 |||| ||||| | |||||||| || |||||||| ||||||||||||||||| ||||| Sbjct 14811 GTTTTCTTGTGCAAGTTTGATACAGCAATTCTAGCCGCTAGAATGGCATAATCGGGATGC 14752 Query 63887 TGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACA 63946 || || || | || || |||| || || | |||||| || || || | ||| Sbjct 14751 TGAGTGGTCATCGAAGCAGCAGTTTCAGCAGCTAAGTTGTCCAGCTCCACTGTGGATACT 14692 Query 63947 CCATTATATATTCCTTGGATAACCTTCATAGCTA 63980 || || || | ||| ||||||||||| |||| Sbjct 14691 CCTTTGTAGAGTCCAGCAATAACCTTCATCGCTA 14658 >seq5978 Length=11568 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||| | | ||| || ||||| | |||||||||||| || ||||| ||||| ||||| Sbjct 5396 ATCTCTGATATAGGTCTCAATAAGCTTACTATACATTTCAGAGTGAATATTTTCGATGGC 5455 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 |||||||| ||||| ||| ||| |||||| | || || |||||| | |||| ||||| Sbjct 5456 AATTTGAAAACCGTAAAAGAATCGAGCCTCAGGAACTTGAACTTCTTTGGAAAAGCGTTC 5515 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 33218 || |||||||| ||||||||||| ||| | || |||||||| | |||||||||||| Sbjct 5780 ACCTCTTCCACAGTCCAAAATGACGCCACAGCTTTTTTATAGAAGGCCCAGATGTCATGG 5839 Query 33219 TATTGAATTGGAAAAATAACAAATCTATTTGGATT 33253 || | || || ||||| ||||||||||| ||||| Sbjct 5840 TACTTGATCGGGAAAATGACAAATCTATTCGGATT 5874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633434599870800