Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2750 100 2e-16 seq3076 86.0 5e-12 >seq2750 Length=29324 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || || || || || ||| |||| || ||||| || || | Sbjct 10008 ATGCAAATTTTTGTGAAGACATTGACTGGAAAGACGATCACCCTGGAAGTTGAGGCCTCG 9949 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| || |||||||| ||||| || |||||||| || || Sbjct 9948 GACACAATCGAGAATGTGAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCAGACCAG 9889 Query 22339 CAACGTCTTATATTTGCCGG 22358 ||||| |||||||||||||| Sbjct 9888 CAACGGCTTATATTTGCCGG 9869 >seq3076 Length=26571 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || |||||| |||| || || || | || |||||||| ||| | | Sbjct 25591 ATGCAGATTTTCGTCAAAACTCTAACAGGAAAGACTATTACGCTTGAAGTCGAAGCTTCG 25532 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| || ||||||||||||||||| ||||| || ||||| Sbjct 25531 GACACTATTGAAAATGTTAAAGCCAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCAG 25472 Query 22339 CAACGTCTTATATTTGCCGG 22358 ||||| || || || || || Sbjct 25471 CAACGACTGATCTTCGCAGG 25452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419600508013495