Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2750 125 1e-23 seq3076 120 6e-22 seq530 104 4e-17 seq11838 86.0 1e-11 seq4940 86.0 1e-11 seq2089 86.0 1e-11 seq1975 86.0 1e-11 seq1008 86.0 1e-11 seq666 86.0 1e-11 seq535 86.0 1e-11 >seq2750 Length=29324 Score = 125 bits (138), Expect = 1e-23 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || ||||| ||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 9022 TTACCTGCAAAAATGAGCCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTC 9081 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||||| ||| ||| |||||||| | | ||||| ||||||||||| || ||||| || Sbjct 9082 GCCTTCACGTTCTCAATGGTGTCAGAAGCCTCTACCTCCAAGGTGATTGTCTTTCCAGTC 9141 Query 68439 AGGGTCTTGACGAATATCTGCATT 68462 | ||||| ||||| || |||||| Sbjct 9142 AACGTCTTCACGAAAATTTGCATT 9165 Score = 114 bits (126), Expect = 2e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 ||||| ||||| || | ||| ||||| ||||||||||||||||| ||||||||||| || Sbjct 9869 CCGGCAAATATAAGCCGTTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGAATCTTGGCT 9928 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || |||||| ||||| | | || ||||||| |||||| || ||||| || | Sbjct 9929 TTCACATTCTCGATTGTGTCCGAGGCCTCAACTTCCAGGGTGATCGTCTTTCCAGTCAAT 9988 Query 68442 GTCTTGACGAATATCTGCATT 68462 ||||| || || || |||||| Sbjct 9989 GTCTTCACAAAAATTTGCATT 10009 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 ||||| || || |||| ||| || || ||||| || |||||||| |||||||||||||| Sbjct 10162 CCGGCAAAGATAAGTCGTTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATCTTTGCT 10221 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || || || ||||| | | || || || | ||||| || || || || ||| Sbjct 10222 TTCACATTTTCAATAGTGTCGGAGGCCTCAACCTCGAGTGTGATTGTCTTCCCGGTTAGG 10281 Query 68442 GTCTTGACGAATATCTGCAT 68461 || || || || |||||||| Sbjct 10282 GTTTTCACAAAGATCTGCAT 10301 >seq3076 Length=26571 Score = 120 bits (132), Expect = 6e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| || | || ||| || || || ||||| ||||| || || |||||||| ||| Sbjct 23968 CCTGCGAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGAATCTTGGCC 24027 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 |||||| |||||||| || | || || ||||||| ||| || || ||||| |||||| Sbjct 24028 TTGACGTTTTCGATGGTATCGGATGCCTCGACTTCCAGGGTAATTGTCTTTCCTGTGAGG 24087 Query 68442 GTCTTGACGAATATCTGCATT 68462 ||||||||||| || |||||| Sbjct 24088 GTCTTGACGAAGATTTGCATT 24108 Score = 120 bits (132), Expect = 6e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || |||| ||||||||| ||||| || ||||| || || |||||||| ||| Sbjct 24267 CCAGCAAAGATCAGTCGTTGTTGGTCCGGTGGGATTCCTTCTTTATCCTGAATCTTGGCC 24326 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 |||||| |||||||| || | || || ||||| | |||||| || ||||| || || Sbjct 24327 TTGACGTTTTCGATGGTATCAGATGCCTCGACTTCGAGGGTGATTGTCTTTCCAGTAAGA 24386 Query 68442 GTCTTGACGAATATCTGCATT 68462 ||||||||||| || |||||| Sbjct 24387 GTCTTGACGAAGATTTGCATT 24407 Score = 109 bits (120), Expect = 1e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| |||||||| || | | || || || || ||||||||||| ||||| |||||||| Sbjct 23668 CTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGAATCTT 23727 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 ||||| || || ||||| || | | ||| ||||| | ||||||||| ||||| || Sbjct 23728 AGCCTTCACATTTTCAATGGTATCAGAAGCTTCAACTTCGAGGGTGATGGTCTTTCCAGT 23787 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 ||||||||||| || || |||||| Sbjct 23788 AAGGGTCTTGACAAAGATTTGCATT 23812 Score = 96.9 bits (106), Expect = 6e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| || |||| ||| || || || ||||| || ||||||||||||||||| || Sbjct 25452 CCTGCGAAGATCAGTCGTTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGGCT 25511 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || || || ||||| | | ||| ||||| | || || || ||||| || || Sbjct 25512 TTAACATTTTCAATAGTGTCCGAAGCTTCGACTTCAAGCGTAATAGTCTTTCCTGTTAGA 25571 Query 68442 GTCTTGACGAATATCTGCATTATGCT 68467 || |||||||| |||||||| |||| Sbjct 25572 GTTTTGACGAAAATCTGCATAGTGCT 25597 >seq530 Length=72016 Score = 104 bits (114), Expect = 4e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || ||||| || |||| || || || || ||||| |||||||| || |||||||| Sbjct 8666 TTACCTGCGAAGATAAGTCGCTGCTGATCAGGCGGAATTCCTTCCTTATCCTGAATCTTG 8725 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||||| || |||||| || || | | || || || | |||||| ||||||||||| Sbjct 8726 GCCTTTACATTCTCGATAGTATCAGAGGCCTCAACCTCGAGGGTGATAGTTTTTCCCGTA 8785 Query 68439 AGGGTCTTGACGAATATCTGCATTA 68463 || ||||| ||||| || ||||||| Sbjct 8786 AGAGTCTTTACGAAGATTTGCATTA 8810 >seq11838 Length=1910 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 86 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 27 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 26 CCCGCATCGGGC 15 >seq4940 Length=15414 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 2227 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 2168 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 2167 CCCGCATCGGGC 2156 >seq2089 Length=36194 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 31389 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 31448 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 31449 CCCGCATCGGGC 31460 >seq1975 Length=37697 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 15379 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 15320 Query 84516 CCCACATCGGGCAGG 84530 ||| |||||||| || Sbjct 15319 CCCGCATCGGGCTGG 15305 >seq1008 Length=54665 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 40000 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 40059 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 40060 CCCGCATCGGGC 40071 >seq666 Length=65901 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 32854 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 32913 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 32914 CCCGCATCGGGC 32925 >seq535 Length=71741 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 33841 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 33900 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 33901 CCCGCATCGGGC 33912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921335280061560