Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3076 111 4e-19 seq530 96.9 8e-15 seq2750 95.1 3e-14 >seq3076 Length=26571 Score = 111 bits (122), Expect = 4e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || |||||||| || ||||| ||||||||||||||||||||| || || || Sbjct 24267 CCAGCAAAGATCAGTCGTTGTTGGTCCGGTGGGATTCCTTCTTTATCCTGAATCTTGGCC 24326 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || |||||||| || | ||| | || |||||||| ||||| ||||| || || ||| Sbjct 24327 TTGACGTTTTCGATGGTATCAGATGCCTCGACTTCGAGGGTGATTGTCTTTCCAGTAAGA 24386 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||||||||| || |||||| Sbjct 24387 GTCTTGACGAAGATTTGCATT 24407 Score = 104 bits (114), Expect = 6e-17 Identities = 110/144 (76%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 ||||||||||||| || || || ||||||| ||||||||||||||||| || || Sbjct 23968 CCTGCGAAGATCAATCGTTGCTG---ATCTGGGGGAATTCCTTCTTTATCCTGAATCTTG 24024 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || |||||||| || | |||| | || ||||| || || || ||||| || || Sbjct 24025 GCCTTGACGTTTTCGATGGTATCGGATGCCTCGACTTCCAGGGTAATTGTCTTTCCTGTG 24084 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||||||||| || |||||| Sbjct 24085 AGGGTCTTGACGAAGATTTGCATT 24108 Score = 104 bits (114), Expect = 6e-17 Identities = 110/144 (76%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 ||||||||||||| ||||| || |||||| ||||| || || |||||||| || Sbjct 24854 CCTGCGAAGATCAATCGCTGCTG---GTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTG 24910 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || ||||||||||| |||| ||| | ||| || ||||| ||||| ||||| || || Sbjct 24911 GCCTTCACGTTTTCAATAGTATCCGAGGCTTCGACCTCGAGAGTGATGGTCTTTCCTGTG 24970 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || || ||||| || ||||||||| Sbjct 24971 AGGGTTTTGACAAAGATCTGCATT 24994 Score = 98.7 bits (108), Expect = 2e-15 Identities = 109/144 (76%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 || |||||||||| ||||| ||| |||||| || |||||||| |||||||| || Sbjct 25145 CCAGCGAAGATCAATCGCTGCTGA---TCTGGGGGAATCCCTTCTTTGTCCTGGATCTTG 25201 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || || ||||| || | ||| | ||| ||||| || || || ||||| || || Sbjct 25202 GCCTTGACATTTTCAATGGTATCTGAGGCTTCGACTTCAAGAGTAATAGTCTTTCCAGTA 25261 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 ||||||||||| || ||||||||| Sbjct 25262 AGAGTCTTGACAAAGATCTGCATT 25285 Score = 96.9 bits (106), Expect = 8e-15 Identities = 108/143 (76%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 |||||||||||||| || || || ||||||| ||||| || || || || || || Sbjct 25452 CCTGCGAAGATCAGTCGTTGCTG---ATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTG 25508 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||| || ||||| |||| || | ||| ||||| ||||| || ||||| || || Sbjct 25509 GCTTTAACATTTTCAATAGTGTCCGAAGCTTCGACTTCAAGCGTAATAGTCTTTCCTGTT 25568 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 ||||| |||||||| |||||||| Sbjct 25569 AGAGTTTTGACGAAAATCTGCAT 25591 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || |||||||| ||||| || || |||||||| ||||||||||| || || Sbjct 23373 CCAGCAAAGATCAGTCGCTGCTGGTCCGGAGGAATTCCTTCCTTATCCTGGATCTTGGCC 23432 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||||||||| || | ||| | || |||||||| ||||| ||||| || || || Sbjct 23433 TTCACGTTTTCGATGGTATCAGAAGCCTCAACTTCGAGGGTGATGGTCTTTCCAGTAAGG 23492 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| || || || |||||| Sbjct 23493 GTCTTAACAAAGATTTGCATT 23513 Score = 89.7 bits (98), Expect = 1e-12 Identities = 107/144 (74%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 ||||||||||||| ||||| || |||||| ||||| || || ||||| ||||| Sbjct 24560 CCTGCGAAGATCAAGCGCTGCTG---GTCTGGGGGAATTCCCTCCTTGTCCTGAATTTTA 24616 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || ||||| || || | || | ||| ||||| || ||||| ||||| || || Sbjct 24617 GCCTTGACGTTCTCAATGGTGTCCGAAGCTTCGACTTCAAGGGTGATTGTCTTTCCAGTA 24676 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||| ||||| ||||||||| Sbjct 24677 AGGGTCTTAACGAAGATCTGCATT 24700 >seq530 Length=72016 Score = 96.9 bits (106), Expect = 8e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 288330 TTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTT 288389 ||| ||||||||||| || ||||| ||| | || |||||||| |||||||| || || Sbjct 8665 TTTACCTGCGAAGATAAGTCGCTGCTGATCAGGCGGAATTCCTTCCTTATCCTGAATCTT 8724 Query 288390 CGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449 || || || || || |||| ||| | || || ||||| ||||| || || || || Sbjct 8725 GGCCTTTACATTCTCGATAGTATCAGAGGCCTCAACCTCGAGGGTGATAGTTTTTCCCGT 8784 Query 288450 CAGAGTCTTGACGAATATCTGCATTA 288475 |||||||| ||||| || ||||||| Sbjct 8785 AAGAGTCTTTACGAAGATTTGCATTA 8810 >seq2750 Length=29324 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || ||||| || ||||||||| | ||| ||||||||||| ||||| || || ||| Sbjct 8422 CCGGCAAAGATAAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGCT 8481 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| ||||| || | ||| | || ||||| || || || || || || || ||| Sbjct 8482 TTCACATTTTCGATCGTGTCGGAGGCCTCCACTTCCAGAGTAATAGTTTTTCCAGTTAGA 8541 Query 288454 GTCTTGACGAATATCTGCAT 288473 || || ||||| |||||||| Sbjct 8542 GTTTTTACGAAGATCTGCAT 8561 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || ||||| || || || ||| |||||||||||| ||||| || || || ||| Sbjct 10162 CCGGCAAAGATAAGTCGTTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATCTTTGCT 10221 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| ||||| |||| ||| | || || ||||| ||||| ||||||||||| || Sbjct 10222 TTCACATTTTCAATAGTGTCGGAGGCCTCAACCTCGAGTGTGATTGTCTTCCCGGTTAGG 10281 Query 288454 GTCTTGACGAATATCTGCAT 288473 || || || || |||||||| Sbjct 10282 GTTTTCACAAAGATCTGCAT 10301 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 ||||| ||||| || ||||| ||| | ||| |||||||||||||| || || || || Sbjct 9376 CCTGCAAAGATAAGTCGCTGCTGATCAGGTGGAATTCCTTCTTTATCTTGTATCTTGGCC 9435 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || ||||| || | ||| | || || || | || |||||||| || |||| Sbjct 9436 TTGACATTTTCGATTGTATCAGATGCCTCAACCTCCAATGTAATCGTCTTTCCTGTCAAC 9495 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| || || ||||||||| Sbjct 9496 GTCTTCACAAAGATCTGCATT 9516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179277705752794