Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq931 86.0 7e-12 seq14839 82.4 8e-11 seq1301 82.4 8e-11 seq1287 82.4 8e-11 >seq931 Length=57168 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| |||| | ||| |||||| |||||| | ||||||||||| ||||||||||| Sbjct 32175 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCAC 32116 Query 57065 TATACTACCGAGGATTG 57081 |||||||||||||| || Sbjct 32115 TATACTACCGAGGACTG 32099 >seq14839 Length=1280 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 57000 AAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 57059 ||| ||||||| |||| | ||| |||||| |||||| | ||||||| || |||||| Sbjct 130 AAAATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTC 71 Query 57060 ACCACTATACTACCGAGGAT 57079 |||||||||||||||||||| Sbjct 70 ACCACTATACTACCGAGGAT 51 >seq1301 Length=48132 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 57000 AAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 57059 ||| ||||||| |||| | ||| |||||| |||||| | ||||||| || |||||| Sbjct 48101 AAAATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTC 48042 Query 57060 ACCACTATACTACCGAGGAT 57079 |||||||||||||||||||| Sbjct 48041 ACCACTATACTACCGAGGAT 48022 >seq1287 Length=48433 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 |||| ||| |||||| |||| | ||| |||||| |||||| | ||||||| || | Sbjct 38369 ATGACAAAAATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 38428 Query 57055 TACTCACCACTATACTACCGAGGAT 57079 ||||||||||||||||||||||||| Sbjct 38429 TACTCACCACTATACTACCGAGGAT 38453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543043568842320