Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2750 89.7 5e-13 >seq2750 Length=29324 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 138474 ACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG 138533 ||||| | |||| || |||||||| || || || || ||||||||||| ||| | || | Sbjct 8421 ACCGGCAAAGATAAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTC-CTGAATCTTAG 8479 Query 138534 -TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCA 138592 ||| | | ||| | ||||||| | |||||| || | || | ||||| ||||| | Sbjct 8480 CTTTCACATTTTCGATCGTGTCGGAGGCCTCCACTTCCAGAGTAATAGTTTTTCCAGTTA 8539 Query 138593 GAGTTTTTACAAAAATCTGCATGGCT 138618 |||||||||| || ||||||||| || Sbjct 8540 GAGTTTTTACGAAGATCTGCATGCCT 8565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496107795652560