Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3076 82.4 7e-11 >seq3076 Length=26571 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 || ||| ||||||| |||||||| || || || || |||||||||||| ||||| | Sbjct 24560 CCTGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATTTTAGCC 24619 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 |||| | || | |||||||| | |||||||| | ||| | || || || || || Sbjct 24620 TTGACGTTCTCAATGGTGTCCGAAGCTTCGACTTCAAGGGTGATTGTCTTTCCAGTAAGG 24679 Query 127094 GTTTTTACAAAAATCTGCAT 127113 || || || || |||||||| Sbjct 24680 GTCTTAACGAAGATCTGCAT 24699 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 |||||| ||||||||||||||||||| || || || || || |||||| ||| || | Sbjct 25145 CCAGCGAAGATCAATCGCTGCTGATCTGGGGGAATCCCTTCTTTGTCCTGGATCTTGGCC 25204 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 |||| | ||| | ||| || | |||||||| | || | || || || || ||| Sbjct 25205 TTGACATTTTCAATGGTATCTGAGGCTTCGACTTCAAGAGTAATAGTCTTTCCAGTAAGA 25264 Query 127094 GTTTTTACAAAAATCTGCAT 127113 || || ||||| |||||||| Sbjct 25265 GTCTTGACAAAGATCTGCAT 25284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475352663669520