Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq3076 100 3e-16 seq2750 87.8 2e-12 >seq3076 Length=26571 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 |||||| | |||||||||||||| || || ||||| ||||||||||| ||||| || Sbjct 23968 CCTGCGAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGAATCTTGGCC 24027 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 |||| ||| | ||| ||||| | ||||||||| || |||| || || || || || Sbjct 24028 TTGACGTTTTCGATGGTATCGGATGCCTCGACTTCCAGGGTAATTGTCTTTCCTGTGAGG 24087 Query 45321 GTTTTTACAAAAATTTGCAT 45340 || || || || |||||||| Sbjct 24088 GTCTTGACGAAGATTTGCAT 24107 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 |||||| | |||| ||||||||| || || ||||| || || || |||||||| || | Sbjct 25452 CCTGCGAAGATCAGTCGTTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGGCT 25511 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 || | ||| | ||||| |||| |||||||| || |||| || || || |||||| Sbjct 25512 TTAACATTTTCAATAGTGTCCGAAGCTTCGACTTCAAGCGTAATAGTCTTTCCTGTTAGA 25571 Query 45321 GTTTTTACAAAAATTTGCAT 45340 ||||| || ||||| ||||| Sbjct 25572 GTTTTGACGAAAATCTGCAT 25591 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 |||| |||||| |||||||| || || ||||||||||| ||||| || |||| | Sbjct 24276 ATCAGTCGTTGTTGGTCCGGTGGGATTCCTTCTTTATCCTGAATCTTGGCCTTGACGTTT 24335 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 || | ||| || || | |||||||||||| || | || || || || ||||| || || Sbjct 24336 TCGATGGTATCAGATGCCTCGACTTCGAGGGTGATTGTCTTTCCAGTAAGAGTCTTGACG 24395 Query 45330 AAAATTTGCAT 45340 || |||||||| Sbjct 24396 AAGATTTGCAT 24406 >seq2750 Length=29324 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 45215 TCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTAC 45274 ||| || || || || ||||| |||||||| || ||||| || ||| | ||| | Sbjct 8436 TCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGCTTTCACATTTTCGAT 8495 Query 45275 GGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAAT 45334 |||||||| | ||| ||||| ||||||| ||||| || |||||||||||||| || || Sbjct 8496 CGTGTCGGAGGCCTCCACTTCCAGAGTAATAGTTTTTCCAGTTAGAGTTTTTACGAAGAT 8555 Query 45335 TTGCAT 45340 ||||| Sbjct 8556 CTGCAT 8561 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 45215 TCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTAC 45274 ||||||||| || || || || ||||| ||||||||||| ||| ||| | ||| | Sbjct 10176 TCGTTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATCTTTGCTTTCACATTTTCAAT 10235 Query 45275 GGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAAT 45334 |||||||| | ||| || ||||| || | || || |||||||| ||||| ||||| || Sbjct 10236 AGTGTCGGAGGCCTCAACCTCGAGTGTGATTGTCTTCCCGGTTAGGGTTTTCACAAAGAT 10295 Query 45335 TTGCAT 45340 ||||| Sbjct 10296 CTGCAT 10301 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 |||| | ||||||||||| || ||||||||||| ||||||||||| || ||| | Sbjct 9876 ATATAAGCCGTTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGAATCTTGGCTTTCACAT 9935 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 || | ||||| || | ||| ||||| || || | ||| || || || | || || | Sbjct 9936 TCTCGATTGTGTCCGAGGCCTCAACTTCCAGGGTGATCGTCTTTCCAGTCAATGTCTTCA 9995 Query 45328 CAAAAATTTGCAT 45340 ||||||||||||| Sbjct 9996 CAAAAATTTGCAT 10008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451862384053080