Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq3076 87.8 4e-12 seq2750 86.0 1e-11 >seq3076 Length=26571 Score = 87.8 bits (96), Expect = 4e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 200947 GGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACT 201006 ||||| ||| | || ||||| | |||||| ||||||||||| ||||||||||||| ||| Sbjct 23304 GGAAAACAGCTTGAGGATGGTCGCACTTTGTCCGATTACAACATCCAGAAAGAGTCCACT 23245 Query 201007 CTTCACCTTGTTTTGAGACTTCG 201029 ||||| ||||| ||| | ||||| Sbjct 23244 CTTCATCTTGTCTTGCGTCTTCG 23222 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| ||||||||||| | ||||||||| || ||| ||| |||||| ||||||||||| Sbjct 23668 CTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGAATCTT 23727 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 |||||| ||| | ||| || | | ||| || || | ||||| ||||| || || Sbjct 23728 AGCCTTCACATTTTCAATGGTATCAGAAGCTTCAACTTCGAGGGTGATGGTCTTTCCAGT 23787 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 || || || ||||| ||||| Sbjct 23788 AAGGGTCTTGACAAAGATTTG 23808 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 || || ||||| || ||||||||||||||| ||||||||| ||||| ||||| | Sbjct 23373 CCAGCAAAGATCAGTCGCTGCTGGTCCGGAGGAATTCCTTCCTTATCCTGGATCTTGGCC 23432 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 |||||| ||||| ||| || | | || || || | ||||| ||||| || || || Sbjct 23433 TTCACGTTTTCGATGGTATCAGAAGCCTCAACTTCGAGGGTGATGGTCTTTCCAGTAAGG 23492 Query 199610 GTTTTCACAAAAATTTG 199626 || || ||||| ||||| Sbjct 23493 GTCTTAACAAAGATTTG 23509 >seq2750 Length=29324 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 ||||| |||||||| |||||||| || || ||||||||| ||||||||||| Sbjct 8729 CCGGCAAAGATGAGCCGCTGCTGATCTGGCGGGATTCCTTCTTTGTCCTGAATCTTGGCT 8788 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 || ||| ||| | ||||| | | ||| || ||||| || || || || || || ||| Sbjct 8789 TTGACGTTTTCAATTGTGTCCGAAGCTTCCACTTCCAATGTAATAGTTTTTCCAGTAAGA 8848 Query 199610 GTTTTCACAAAAATTTG 199626 |||||||| || ||||| Sbjct 8849 GTTTTCACGAAGATTTG 8865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178545139754841