Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq137 120 1e-21 seq716 111 6e-19 seq530 87.8 7e-12 seq2750 86.0 2e-11 >seq137 Length=114916 Score = 120 bits (132), Expect = 1e-21 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303 || ||||| || || ||||||| || ||||||||||| | || || ||| || Sbjct 58793 CCGGAAGAGATCTCTGCTATGGTACTCGGAAAAATGAAAGAGATTGCTGAGTCGTATCTT 58852 Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363 || ||| | | || || | || || || ||||||||||||||||| |||||| Sbjct 58853 GGAAAGGAAGTGAAACACGCCGTCGTGACGGTACCAGCTTATTTCAATGATGCTCAACGG 58912 Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 || || || |||||||| ||| |||||||| ||||| ||| |||| || || |||||| Sbjct 58913 CAGGCCACCAAAGATGCGGGAACGATTGCTGGATTAAACGTTGTTCGTATCATCAATGAA 58972 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACT 451452 || || || |||||| | |||||||| || Sbjct 58973 CCAACTGCTGCTGCTATCGCATATGGGCT 59001 Score = 91.5 bits (100), Expect = 6e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 ||||||||||||||||| ||||| | ||| ||||| ||||| ||| |||||||| ||| Sbjct 57984 ATTGGAATTGATCTTGGCACCACGTATTCCTGTGTCGGTGTGTACAAAAATGGACGCGTA 58043 Query 450977 GAAATTATAGCAAATGACCAAGG 450999 |||||||| || ||||| ||||| Sbjct 58044 GAAATTATTGCTAATGATCAAGG 58066 >seq716 Length=63988 Score = 111 bits (122), Expect = 6e-19 Identities = 197/287 (69%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 ||||| || | || || || || || ||||| || | ||||| ||||| || |||||| Sbjct 53399 GATGCTGTCGTCACAGTACCAGCATACTTCAACGACTCTCAACGTCAAGCCACCAAAGAT 53340 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 |||||| || |||||| | ||||| ||||| || || ||||||||||| || ||||| Sbjct 53339 GCAGGAGCAATCGCTGGTCTCAATGTCCTTCGTATCATCAATGAACCTACCGCTGCTGCC 53280 Query 451439 CTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGAT 451498 | || || || |||| || || | ||| | || ||| | | | || ||| Sbjct 53279 ATCGCCTACGGTCTAGACAA---GAAGGGAACCGGCGAGCGAAACGTGCTCATTTTCGAT 53223 Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558 |||| || || || ||| || | ||| | ||||| ||||| | |||||||| Sbjct 53222 CTTGGAGGCGGTACCTTCGATGTGTCGATCCTTACTATTGAGGATGGAATCTTTGAAGTC 53163 Query 451559 AAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || | ||| ||| || || ||||| ||||| ||||| |||| || Sbjct 53162 AAATCCACCGCTGGAGACACCCATCTTGGAGGAGAAGACTTTGACAA 53116 >seq530 Length=72016 Score = 87.8 bits (96), Expect = 7e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 391048 TAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCAT 391107 ||||| | || ||||| || || || || || |||||||| || || || ||||| | | Sbjct 8810 TAATGCAAATCTTCGTAAAGACTCTTACGGGAAAAACTATCACCCTCGAGGTTGAGGCCT 8751 Query 391108 CTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATC 391167 |||||| || || | | || || ||||| ||||||||||||||||| ||||||| Sbjct 8750 CTGATACTATCGAGAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCGCCTGATC 8691 Query 391168 AACAACGTTTAATTTTCTCAGGGAAA 391193 | || || | || ||| |||| ||| Sbjct 8690 AGCAGCGACTTATCTTCGCAGGTAAA 8665 >seq2750 Length=29324 Score = 86.0 bits (94), Expect = 2e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| ||||| || ||||| |||||||||||||| || || || | || Sbjct 8561 ATGCAGATCTTCGTAAAAACTCTAACTGGAAAAACTATTACTCTGGAAGTGGAGGCCTCC 8502 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| | | ||| || ||||| || || ||||||||||| ||||||||| Sbjct 8501 GACACGATCGAAAATGTGAAAGCTAAGATTCAGGACAAAGAAGGAATTCCACCTGATCAA 8442 Query 391170 CAACG 391174 || || Sbjct 8441 CAGCG 8437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975087501869684