Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq716 230 2e-54 seq137 111 1e-18 >seq716 Length=63988 Score = 230 bits (254), Expect = 2e-54 Identities = 664/1012 (66%), Gaps = 10/1012 (1%) Strand=Plus/Plus Query 517301 ACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCC 517360 || |||||||| || || |||||| | |||||||| || || || | || |||| Sbjct 52393 ACCTCAATTTGCGGTACGCCTCTCGGTGCAGGTGGAATTCCGGACAGCTCGAACTTTCCA 52452 Query 517361 AGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACA 517420 || ||| || ||||| || | | ||||| || ||||| | ||||| || || Sbjct 52453 AGTAGATTGTTGTCTTTGGTCATTGCACGTTCTCCTTCGAAGACCTGGATGAGCACACCA 52512 Query 517421 GTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAA-GGAATTGTTGTGTT 517479 | || || || || || || || ||| ||||| | | | | || ||||| ||||| Sbjct 52513 GGCTGGTTGTCAGAGTAGGTGGTGAATG-TCTGGCTGGTCTTCGTTGGGATTGTGGTGTT 52571 Query 517480 TCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGT 517539 || | || | | ||||| | ||| || || ||||| | ||| || || ||||||| Sbjct 52572 CCTCTTGATCAGAGCTGTCATTACACCTCCAGCGGTTTCAATACCGAGTGATAGAGGAGC 52631 Query 517540 GACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTG 517598 ||||||| |||| | || || | ||| | | || | ||| ||||||||| | Sbjct 52632 CACATCAAGAAGGAGCAAATCCTGCACAGCTTC-TGACTTGTCACCGGAAAGAATAGCGG 52690 Query 517599 CTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTT 517658 |||||| ||||| || || |||||||| |||||||| || | | | ||| |||| || Sbjct 52691 CTTGAACTGCAGCTCCGTAGGCAACAGCCTCATCAGGGTTGATCGACTTATTGAGTTCTT 52750 Query 517659 TACCATTGAAAAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCA 517717 | ||| ||| |||| || || || | ||| || || |||||||||| |||||||||| Sbjct 52751 TTCCAGAGAACAAATCAGATAGCAGCT-TCTGGACTTTTGGAATACGAGTTGATCCTCCA 52809 Query 517718 ACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCA 517777 || | || || || || ||||| || |||| || | || | || ||| Sbjct 52810 ACAAGAACGATATCGTGGACCTGGCTCTTGTCCATCTTAGCGTCTCTCAGCGACTTCTCA 52869 Query 517778 ACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTA 517837 || || || | | | || | || | || || || |||||| || | |||| Sbjct 52870 ACAGGATCCATGGTGGAACGGAAGAGATCAGCGCACAGCTCCTCGAATCGGGCACGAGTA 52929 Query 517838 AGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTC 517897 | | | |||| || || ||||| | ||||||| ||| |||| || |||| | Sbjct 52930 ATGTTCGTGTAGAAATCGATGCCCTCGAAGAGTGAATCAATTTCGATCGAAGCCTGAGAC 52989 Query 517898 GAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTT 517957 || || || || | ||| || |||||||| || ||||| | || | ||| | || Sbjct 52990 GACGATGACAGAGTACGCTTGGCACGTTCGCAAGCTGTGCGGAGACGTCGCAGAGC--AC 53047 Query 517958 GCTGATTG--ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTA 518015 | ||||| || | ||| | || | || |||||||| || | || | | | Sbjct 53048 GAGGATTGGTGTTGAGATCCTTCTTGTGCTTCCTCTTGAATTCGGCGACGAAGTGGTTCA 53107 Query 518016 CAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTT 518075 | | ||| || ||||| ||||| ||||| | | || | ||| | || | | | |||| Sbjct 53108 CCATACGGTTGTCAAAGTCTTCTCCTCCAAGATGGGTGTCTCCAGCGGTGGATTTGACTT 53167 Query 518076 GGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAA 518135 || | |||||| |||| || | | | ||||| ||| || || || | ||| | Sbjct 53168 CAAAGATTCCATCCTCAATAGTAAGGATCGACACATCGAAGGTACCGCCTCCAAGATCGA 53227 Query 518136 AAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAG 518195 |||| || || || || | | || || || ||||| || || | ||||||| Sbjct 53228 AAATGAGCACGTTTCGCTCGCCGGTTCCCTTCTTGTCTAGACCGTAGGCGATGGCAGCAG 53287 Query 518196 CAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAG 518255 | || |||||||| || || | | ||||| |||||||| ||| |||||||||||| | Sbjct 53288 CGGTAGGTTCATTGATGATACGAAGGACATTGAGACCAGCGATTGCTCCTGCATCTTTGG 53347 Query 518256 TGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 518307 ||||||| | ||| || ||||| || ||||| || || || | || ||||| Sbjct 53348 TGGCTTGACGTTGAGAGTCGTTGAAGTATGCTGGTACTGTGACGACAGCATC 53399 Score = 86.0 bits (94), Expect = 5e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 518540 GGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAAT 518599 ||||| || || | || | ||||| ||||||||||| ||| ||||||| || |||||| Sbjct 53792 GGATTCATGGCCACCTGGTTCTTGGCGGCATCTCCAATAAGACGTTCTGTATCCGTAAAT 53851 Query 518600 GAAACATATGATGGAGTTGTGCGATTACCT 518629 | |||||||| || ||||||||||||||| Sbjct 53852 GCGACATATGAAGGGGTTGTGCGATTACCT 53881 >seq137 Length=114916 Score = 111 bits (122), Expect = 1e-18 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || |||||||| ||||| || | ||||||||||||||||||||| || || | | ||| Sbjct 59010 TTCTTATCAAGCCCATATGCGATAGCAGCAGCAGTTGGTTCATTGATGATACGAACAACG 58951 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || | |||||||| |||| |||||||| ||||| || | ||| | ||| || ||||| Sbjct 58950 TTTAATCCAGCAATCGTTCCCGCATCTTTGGTGGCCTGCCGTTGAGCATCATTGAAATAA 58891 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATA 518328 || || || || | ||||| | | ||||| || |||| ||| Sbjct 58890 GCTGGTACCGTCACGACGGCGTGTTTCACTTCCTTTCCAAGATA 58847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779585638643638