Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq716 298 7e-76 seq4923 168 8e-37 seq137 159 4e-34 >seq716 Length=63988 Score = 298 bits (330), Expect = 7e-76 Identities = 675/1012 (67%), Gaps = 2/1012 (0%) Strand=Plus/Plus Query 6728 CTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTA 6787 ||||| | |||||| ||| || |||||||| | |||||| || | | || || | Sbjct 52390 CTTACCTCAATTTGCGGTACGCCTCTCGGTGCAGGTGGAATTCCGGACAGCTCGAACTTT 52449 Query 6788 CCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACC 6847 ||||||| | |||| || | | | | |||||| ||||| |||| | || ||| Sbjct 52450 CCAAGTAGATTGTTGTCTTTGGTCATTGCACGTTCTCCTTCGAAGACCTGGATGAGCACA 52509 Query 6848 GCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTA 6907 |||| || || || || | ||| | || |||| | ||| || || || Sbjct 52510 CCAGGCTGGTTGTCAGAGTAGGTGGTGAATGTCTGGCTGGTCTTCGTTGGGATTGTGGTG 52569 Query 6908 TTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGT 6967 || ||| || | | ||||| | ||| || ||||| | || || || ||||| Sbjct 52570 TTCCTCTTGATCAGAGCTGTCATTACACCTCCAGCGGTTTCAATACCGAGTGATAGAGGA 52629 Query 6968 GTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCG 7027 | ||| || | || | || || || |||| ||| | ||||| | | || ||| Sbjct 52630 GCCACATCAAGAAGGAGCAAATCCTGCACAGCTTCTGACTTGTCACCGGAAAGAATAGCG 52689 Query 7028 GCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCT 7087 ||||| || | || ||||| || || |||||||| ||||| |||| ||||| |||||| Sbjct 52690 GCTTGAACTGCAGCTCCGTAGGCAACAGCCTCATCAGGGTTGATCGACTTATTGAGTTCT 52749 Query 7088 TTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCG 7147 || || || |||| |||| || | || | ||| || || || || ||||| || Sbjct 52750 TTTCCAGAGAACAAATCAGATAGCAGCTTCTGGACTTTTGGAATACGAGTTGATCCTCCA 52809 Query 7148 ACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCG 7207 || | |||||| || | || | || || ||||| | ||||| || | || || Sbjct 52810 ACAAGAACGATATCGTGGACCTGGCTCTTGTCCATCTTAGCGTCTCTCAGCGACTTCTCA 52869 Query 7208 ACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTA 7267 ||||| ||||| |||||| | || ||||| ||||| || || ||||| ||| Sbjct 52870 ACAGGATCCATGGTGGAACGGAAGAGATCAGCGCACAGCTCCTCGAATCGGGCACGAGTA 52929 Query 7268 ATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCC 7327 ||| || |||||||| | ||| ||| | | ||||||||||| || | | || | | Sbjct 52930 ATGTTCGTGTAGAAATCGATGCCCTCGAAGAGTGAATCAATTTCGATCGAAGCCTGAGAC 52989 Query 7328 GTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGC 7387 | ||| || | || ||||| || || || || || || || | ||| || || ||||| Sbjct 52990 GACGATGACAGAGTACGCTTGGCACGTTCGCAAGCTGTGCGGAGACGTCGCAGAGCACGA 53049 Query 7388 GGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGG 7447 || || | | ||| ||||| || || | || || || | |||||| | Sbjct 53050 GGATTGGTGTTGAGATCCTTCTTGTGCTTCCTCTTGAATTCGGCGACGAAGTGGTTCACC 53109 Query 7448 AGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCA 7507 | | || || ||||| || || | || || || || ||||| | |||||||||| Sbjct 53110 ATACGGTTGTCAAAGTCTTCTCCTCCAAGATGGGTGTCTCCAGCGGTGGATTTGACTTCA 53169 Query 7508 AAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAA 7567 ||||| || | ||||| | | | ||| ||||| || ||||| || || || || ||| Sbjct 53170 AAGATTCCATCCTCAATAGTAAGGATCGACACATCGAAGGTACCGCCTCCAAGATCGAAA 53229 Query 7568 ATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCC 7627 ||||| ||||| ||| || | ||||| || |||||||| ||||| || || || Sbjct 53230 ATGAGCACGTTTCGCTCGCCGGTTCCCTTCTTGTCTAGACCGTAGGCGATGGCAGCAGCG 53289 Query 7628 GTTGGTTCATTAATAATACGAA-GACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGT 7686 || |||||||| || ||||||| |||| || || ||||| || | | | |||||||| || Sbjct 53290 GTAGGTTCATTGATGATACGAAGGACA-TTGAGACCAGCGATTGCTCCTGCATCTTTGGT 53348 Query 7687 CGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCC 7738 ||||| ||||| || ||||| ||||| || || || || ||||| || ||| Sbjct 53349 GGCTTGACGTTGAGAGTCGTTGAAGTATGCTGGTACTGTGACGACAGCATCC 53400 >seq4923 Length=15518 Score = 168 bits (186), Expect = 8e-37 Identities = 179/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 ||||| || |||||||| |||||||| || || || || || || ||||| || | | Sbjct 5259 TTCTTGTCAAGACCGTAGGCGATAGCGGCGGCAGTGGGCTCGTTGATAATTCGGACAACA 5200 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 |||| ||||| || ||| | || || || || ||||| ||||| | |||||| |||||| Sbjct 5199 TTCAATCCAGCGATCGTTCCTGCGTCCTTTGTTGCTTGACGTTGAGCATCGTTGAAGTAG 5140 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || || || || || || |||| | | |||| ||| |||||||| ||||| ||||| || Sbjct 5139 GCTGGTACGGTAACAACGGCGTGCTTCACTTCCTTGCCGAGATAGGATTCAGCGATTTCC 5080 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTC 7830 |||||||| || | ||||| | ||||||||||| | |||||||| ||| |||| Sbjct 5079 TTCATTTTCGTCAAGACCATGGCGGAAATCTCTTCGGGGGCAAACTGCTTCATTTC 5024 >seq137 Length=114916 Score = 159 bits (176), Expect = 4e-34 Identities = 177/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 |||||||| || || || |||||||| || || ||||||||||| || ||||||| | | Sbjct 59010 TTCTTATCAAGCCCATATGCGATAGCAGCAGCAGTTGGTTCATTGATGATACGAACAACG 58951 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || | |||||||| ||| |||||||||| || || || ||||| | ||| || || || Sbjct 58950 TTTAATCCAGCAATCGTTCCCGCATCTTTGGTGGCCTGCCGTTGAGCATCATTGAAATAA 58891 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || || ||||| ||||| |||| | |||| ||| || |||||||| || || || ||| Sbjct 58890 GCTGGTACCGTCACGACGGCGTGTTTCACTTCCTTTCCAAGATACGACTCAGCAATCTCT 58831 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTC 7830 |||||||| || ||||| | || |||||||| | | ||||| || |||| Sbjct 58830 TTCATTTTTCCGAGTACCATAGCAGAGATCTCTTCCGGTGTGAACTGCTTGTTTTC 58775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634934932315320