Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3288 98.7 1e-15 seq2718 96.9 4e-15 >seq3288 Length=24717 Score = 98.7 bits (108), Expect = 1e-15 Identities = 203/299 (68%), Gaps = 5/299 (2%) Strand=Plus/Plus Query 111747 AGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATT 111806 || || ||| | ||| |||||||||| | ||| | |||||||| || ||||||| Sbjct 15518 AGGCCACAACTCTCCTCTTGTTTCCTTTTAACAATGAGCGAGGATTCGATTGCTGGCATT 15577 Query 111807 TACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCAC 111866 |||| ||| | | ||||||| | ||||| ||| | || || || || || || || Sbjct 15578 TACGACACATTGAAACAATGTGCACTGATCTCGAAGAGTGCCGGCGGAATAGGTCTGAAC 15637 Query 111867 ATCCATGATGTCAGAGCCAACAAG-TCTCGTATTAGAGGTACAAATGGTCAATCAGATGG 111925 | ||| || |||||| |||| | || | ||| || |||||||| ||| |||| Sbjct 15638 GTGCATAATATCAGAG-CAACTGGATCGCTGATTGCGGGAACAAATGGCACATCCAATGG 15696 Query 111926 TATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCG 111985 | ||||| ||||||||||| | || ||| ||||| || || |||||| || Sbjct 15697 CTTGATTCCGATGCTTCGCGTGTACAATAACACTGCGCGTTACGTGGACCAAGGCGGTAA 15756 Query 111986 T---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGT 112041 | ||| |||| | ||||| |||| || || || ||||| || || || | |||| Sbjct 15757 TAAGCGCCCGGGAGCGTTCGCAATCTACCTGGAACCGTGGCATGCTGACATTTTCGAGT 15815 >seq2718 Length=29581 Score = 96.9 bits (106), Expect = 4e-15 Identities = 119/161 (74%), Gaps = 4/161 (2%) Strand=Plus/Plus Query 176911 CTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAAC 176970 ||| ||||||||||| || ||||| ||| ||||||| || |||||| ||||| | ||| Sbjct 15637 CTTACCACGAAGAGGAAATACACCATAGCGATCGCGGCCGACCACACCAAGACCAGAAAC 15696 Query 176971 CGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGT--ACACTTGCCAGATTGT 177028 || | |||||| || ||||| ||||| || | || ||||| ||| || || | | Sbjct 15697 AGCCAACGTTTTGGCTGAATCTCCCTCAGTGAGAATCAGTGTGCACAGCTGTGAGTTCCT 15756 Query 177029 GCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACC 177069 ||| || || | ||| ||||| |||||||| || ||||| Sbjct 15757 --CGTGCCAGCGTCGTTAGCATCTTCCAATTTTGGGATACC 15795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620549015464560