Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3076 132 1e-25 seq2750 113 1e-19 seq530 98.7 2e-15 >seq3076 Length=26571 Score = 132 bits (146), Expect = 1e-25 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 ||||||||||||| | || || |||||||| ||||| || || ||||| |||||||| Sbjct 24558 TACCTGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATTTTAG 24617 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||||||||||||||||||||||||| ||| ||||||||||| | |||||||| || | Sbjct 24618 CCTTGACGTTCTCAATGGTGTCCGAAGCTTCGACTTCAAGGGTGATTGTCTTTCCAGTAA 24677 Query 195119 AAGTTTTTACGAACACTTGCATT 195141 || || ||||| | |||||| Sbjct 24678 GGGTCTTAACGAAGATCTGCATT 24700 Score = 131 bits (144), Expect = 4e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 ||||||||||||| |||||||| || ||||| ||||| || || ||||||||||| || Sbjct 25450 TACCTGCGAAGATCAGTCGTTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGG 25509 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || || || ||||| ||||||||| ||| |||||||| |||| ||||||||||| | Sbjct 25510 CTTTAACATTTTCAATAGTGTCCGAAGCTTCGACTTCAAGCGTAATAGTCTTTCCTGTTA 25569 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 |||||| ||||| | ||||| Sbjct 25570 GAGTTTTGACGAAAATCTGCAT 25591 Score = 116 bits (128), Expect = 8e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 |||||||||||| | |||||| || ||||| ||||| |||||||| || ||||| || Sbjct 23967 ACCTGCGAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGAATCTTGGC 24026 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 ||||||||| || ||||| || || || ||||| ||||||| ||||||||||| | Sbjct 24027 CTTGACGTTTTCGATGGTATCGGATGCCTCGACTTCCAGGGTAATTGTCTTTCCTGTGAG 24086 Query 195120 AGTTTTTACGAACACTTGCATT 195141 || || ||||| | ||||||| Sbjct 24087 GGTCTTGACGAAGATTTGCATT 24108 Score = 113 bits (124), Expect = 1e-19 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| | || || || ||||||||||||||||||||||| ||||| || Sbjct 23668 CTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGAATCTT 23727 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || || |||||||| || ||| ||| ||||| ||||| | |||||||| || Sbjct 23728 AGCCTTCACATTTTCAATGGTATCAGAAGCTTCAACTTCGAGGGTGATGGTCTTTCCAGT 23787 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | || || || || | ||||||| Sbjct 23788 AAGGGTCTTGACAAAGATTTGCATT 23812 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || ||||| |||||||||||||| || || || |||||||| || ||||| || Sbjct 24265 TACCAGCAAAGATCAGTCGTTGTTGGTCCGGTGGGATTCCTTCTTTATCCTGAATCTTGG 24324 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||||||||| || ||||| || || || ||||| ||||| | |||||||| || | Sbjct 24325 CCTTGACGTTTTCGATGGTATCAGATGCCTCGACTTCGAGGGTGATTGTCTTTCCAGTAA 24384 Query 195119 AAGTTTTTACGAACACTTGCATT 195141 ||| || ||||| | ||||||| Sbjct 24385 GAGTCTTGACGAAGATTTGCATT 24407 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| |||||||| | ||| || || ||||| ||||| ||||||||||| || || || Sbjct 25143 TACCAGCGAAGATCAATCGCTGCTGATCTGGGGGAATCCCTTCTTTGTCCTGGATCTTGG 25202 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 |||||| || |||||||| || || ||| |||||||| |||| |||||||| || | Sbjct 25203 CCTTGACATTTTCAATGGTATCTGAGGCTTCGACTTCAAGAGTAATAGTCTTTCCAGTAA 25262 Query 195119 AAGTTTTTACGAACACTTGCATT 195141 ||| || || || | |||||| Sbjct 25263 GAGTCTTGACAAAGATCTGCATT 25285 Score = 96.9 bits (106), Expect = 8e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 ||||||||||||| | ||| || |||||||| ||||| || || ||||| || || || Sbjct 24852 TACCTGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGG 24911 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||| ||||| ||||| || ||||| ||| || || || || | ||||||||||| | Sbjct 24912 CCTTCACGTTTTCAATAGTATCCGAGGCTTCGACCTCGAGAGTGATGGTCTTTCCTGTGA 24971 Query 195119 AAGTTTTTACGAACACTTGCATT 195141 ||||| || || | |||||| Sbjct 24972 GGGTTTTGACAAAGATCTGCATT 24994 >seq2750 Length=29324 Score = 113 bits (124), Expect = 1e-19 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||| || || ||||| ||||| |||||||| ||||||||||| || |||||||| || Sbjct 9865 CTGACCGGCAAATATAAGCCGTTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGAATCTT 9924 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || ||||| || |||||||| || ||||| ||||| | ||||||||| || Sbjct 9925 GGCTTTCACATTCTCGATTGTGTCCGAGGCCTCAACTTCCAGGGTGATCGTCTTTCCAGT 9984 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 ||| || || || || | ||||||| Sbjct 9985 CAATGTCTTCACAAAAATTTGCATT 10009 Score = 111 bits (122), Expect = 3e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 ||| || ||||| || || || || ||||| || || ||||||||||| ||||| || Sbjct 8728 ACCGGCAAAGATGAGCCGCTGCTGATCTGGCGGGATTCCTTCTTTGTCCTGAATCTTGGC 8787 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 |||||||| ||||| ||||||||| ||||||||| | |||| || ||||| || | Sbjct 8788 TTTGACGTTTTCAATTGTGTCCGAAGCTTCCACTTCCAATGTAATAGTTTTTCCAGTAAG 8847 Query 195120 AGTTTTTACGAACACTTGCAT 195140 |||||| ||||| | |||||| Sbjct 8848 AGTTTTCACGAAGATTTGCAT 8868 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 |||||||| || || || | ||| |||||||| || || ||||| |||||||| || || Sbjct 9022 TTACCTGCAAAAATGAGCCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTC 9081 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| ||||||||||||||||| ||| || || || | ||| | |||||||| ||| Sbjct 9082 GCCTTCACGTTCTCAATGGTGTCAGAAGCCTCTACCTCCAAGGTGATTGTCTTTCCAGTC 9141 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 || || || ||||| | ||||||| Sbjct 9142 AACGTCTTCACGAAAATTTGCATT 9165 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 ||| || ||||||||||| ||||| || || ||||| ||||||||||| ||||| || Sbjct 8421 ACCGGCAAAGATAAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGC 8480 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 || || || || || ||||| || |||||||| || |||| || ||||| || | Sbjct 8481 TTTCACATTTTCGATCGTGTCGGAGGCCTCCACTTCCAGAGTAATAGTTTTTCCAGTTAG 8540 Query 195120 AGTTTTTACGAACACTTGCAT 195140 |||||||||||| | ||||| Sbjct 8541 AGTTTTTACGAAGATCTGCAT 8561 Score = 95.1 bits (104), Expect = 3e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 |||||| ||||||||||| || || || || ||||| |||||||| ||||| || || Sbjct 9375 ACCTGCAAAGATAAGTCGCTGCTGATCAGGTGGAATTCCTTCTTTATCTTGTATCTTGGC 9434 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 |||||| || || || || || || || || || | |||| ||||||||||||||| Sbjct 9435 CTTGACATTTTCGATTGTATCAGATGCCTCAACCTCCAATGTAATCGTCTTTCCTGTCAA 9494 Query 195120 AGTTTTTACGAACACTTGCATT 195141 || || || || | |||||| Sbjct 9495 CGTCTTCACAAAGATCTGCATT 9516 >seq530 Length=72016 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 |||||||||||||||||||| || || || || ||||| ||||| || || ||||| || Sbjct 8666 TTACCTGCGAAGATAAGTCGCTGCTGATCAGGCGGAATTCCTTCCTTATCCTGAATCTTG 8725 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || ||||| || || || || || || || ||||| | || ||||| || Sbjct 8726 GCCTTTACATTCTCGATAGTATCAGAGGCCTCAACCTCGAGGGTGATAGTTTTTCCCGTA 8785 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 | ||| |||||||| | ||||||| Sbjct 8786 AGAGTCTTTACGAAGATTTGCATT 8809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109127313747941