Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3288 87.8 2e-12 >seq3288 Length=24717 Score = 87.8 bits (96), Expect = 2e-12 Identities = 183/273 (67%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 48306 ATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCT 48365 || ||||||||||| ||||| | || ||||| | | || || || |||||||| ||| Sbjct 15807 ATGTCAGCATGCCACGGTTCCAGGTAGATTGCGAACGCTCCCGGGCGCTTATTACCGCCT 15748 Query 48366 TGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGAT 48425 || || | || | ||||| || || || || | | ||| || | | ||||| ||| Sbjct 15747 TGGTCCACGTAACGCGCAGTGTTATTGTACACGCGAAGCATCGGAATCAAGCCATTGGAT 15688 Query 48426 ATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCT 48485 | ||||| ||||||| ||| |||| | ||||| |||||| | | |||| Sbjct 15687 GTGCCATTTGTTCCCGCAATCAGCGATCCAGTTGCTCTGATATTATGCACGTTCAGACCT 15628 Query 48486 ATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCT 48545 || || || || | || || || || ||||| |||| | || || ||||| || | Sbjct 15627 ATTCCGCCGGCACTCTTCGAGATCAGTGCACATTGTTTCAATGTGTCGTAAATGCCAGCA 15568 Query 48546 ATACTATCATCTATCATATTTAATAGAAAACAA 48578 || ||| || |||| |||| || |||||| Sbjct 15567 ATCGAATCCTCGCTCATTGTTAAAAGGAAACAA 15535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561933682029720