Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq716 158 1e-32 seq137 125 6e-23 seq2750 98.7 8e-15 seq530 98.7 8e-15 seq4923 89.7 4e-12 >seq716 Length=63988 Score = 158 bits (174), Expect = 1e-32 Identities = 438/659 (66%), Gaps = 12/659 (2%) Strand=Plus/Minus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATC-TGGTAC 551953 ||||| || ||||| | || ||||||||| | ||||| || |||| ||||| | || | Sbjct 53045 GCTCTGCGACGTCTCCGCACAGCTTGCGAACGTGCCAAGCGTACTCTGTCATCGTCGT-C 52987 Query 551954 TCAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTC 552013 ||| | | || ||| | |||||| | || ||||| || |||| | ||| ||| | Sbjct 52986 TCAGGCTTCGATCGAAATTGATTCACTCTTCGAGGGCATCGATTTCTACACGAACATTAC 52927 Query 552014 GAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGA 552073 | ||| ||| || || | || |||||||||| | || || || || || || Sbjct 52926 TCGTGCCCGATTCGAGGAGCTGTGCGCTGATCTCTTCCGTTCCACCATGGATCCTGTTGA 52867 Query 552074 ACAAGTTT-TAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTG 552132 |||| | ||||| | ||||| || || | | || || || || || ||||||| Sbjct 52866 G-AAGTCGCTGAGAGACGCTAAGATGGACAAGAGCCAGGTCCACGATATCGTTCTTGTTG 52808 Query 552133 GTGGATCTACAAGAATTCCTAAAATTCGCGAAA-TGTTAAGTTCTTATTTCAATGGTAAA 552191 | ||||| || | ||||| |||| || ||| || || | || ||| ||| ||| Sbjct 52807 GAGGATCAACTCGTATTCC-AAAAGTCCAGAAGCTGCTATCTGATTTGTTCTCTGGAAAA 52749 Query 552192 AAATTAAATGAAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAG 552249 || | ||| |||| | || || ||||||||||||||||| || || ||| |||||| Sbjct 52748 GAACTCAAT--AAGTCGATCAACCCTGATGAGGCTGTTGCCTACGGAGCTGCAGTTCAAG 52691 Query 552250 CAGCTATTCTTTCTGGACA-AACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTT 552308 | ||||||||||| || | || | | ||| | || || | | ||| | ||||| Sbjct 52690 CCGCTATTCTTTCCGGTGACAAGTCA-GAAGCTGTGCAGGATTTGCTCCTTCTTGATGTG 52632 Query 552309 ACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGA 552368 |||||||||| || ||| | ||||| | ||||||| | ||||| ||| ||| | || Sbjct 52631 GCTCCTCTATCACTCGGTATTGAAACCGCTGGAGGTGTAATGACAGCTCTGATCAAGAGG 52572 Query 552369 AATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACT 552428 || || || || || || | | ||| | || || || || || || || Sbjct 52571 AACACCACAATCCCAACGAAGACCAGCCAGACATTCACCACCTACTCTGACAACCAGCCT 52512 Query 552429 GCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTT 552488 | ||| || || | || ||||||||| | | | || ||||| || |||| |||| Sbjct 52511 GGTGTGCTCATCCAGGTCTTCGAAGGAGAACGTGCAATGACCAAAGACAACAATCTACTT 52452 Query 552489 GGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGT 552547 || | || | | || ||||| ||||| || | || |||||||||||||| || Sbjct 52451 GGAAAGTTCGAGCTGTCCGGAATTCCACCTGCACCGAGAGGCGTACCGCAAATTGAGGT 52393 Score = 123 bits (136), Expect = 2e-22 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 |||||| || | || ||||||||||| || || ||||| ||||||||||| || ||||| Sbjct 53400 GGATGCTGTCGTCACAGTACCAGCATACTTCAACGACTCTCAACGTCAAGCCACCAAAGA 53341 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| ||| || ||||| || ||||| |||||||| |||||||||||||| |||||||| Sbjct 53340 TGCAGGAGCAATCGCTGGTCTCAATGTCCTTCGTATCATCAATGAACCTACCGCTGCTGC 53281 Query 550516 ACTTGCATATGGACTTGATAA 550536 | || || || || || || Sbjct 53280 CATCGCCTACGGTCTAGACAA 53260 >seq137 Length=114916 Score = 125 bits (138), Expect = 6e-23 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 550320 CACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC-AGTGCTTTT 550378 |||| ||| | || || ||||||| | ||||||||| | | || ||| | | | Sbjct 58791 CACCGGAAGAGATCTCTGCTATGGTACTCGGAAAAATGAAAGAGATTGCTGAGT-CGTAT 58849 Query 550379 GTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAA 550438 |||| | ||||| | | || || | || |||||||| ||||| ||||| | ||| Sbjct 58850 CTTGGAAAGGAAGTGAAACACGCCGTCGTGACGGTACCAGCTTATTTCAATGATGCTCAA 58909 Query 550439 CGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAAT 550498 || || || || |||||||| ||| ||||||||| | || ||| ||||||| |||||| Sbjct 58910 CGGCAGGCCACCAAAGATGCGGGAACGATTGCTGGATTAAACGTTGTTCGTATCATCAAT 58969 Query 550499 GAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||||| ||||||||||| | |||||||| |||||||| Sbjct 58970 GAACCAACTGCTGCTGCTATCGCATATGGGCTTGATAA 59007 >seq2750 Length=29324 Score = 98.7 bits (108), Expect = 8e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 |||||||| ||||||| || |||||||| |||||||||||||| || ||||| || | Sbjct 8422 CCGGCAAAGATAAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGCT 8481 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || || || || || | | | | || ||| ||||||| |||||| ||||| || Sbjct 8482 TTCACATTTTCGATCGTGTCGGAG-GCCTCCACTTCCAGAGTAATAGTTTTTCCAGTTAG 8540 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 |||||| ||||| || ||||| Sbjct 8541 AGTTTTTACGAAGATCTGCAT 8561 Score = 89.7 bits (98), Expect = 4e-12 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 |||||||| || || | |||||||| || || ||||||||||| || ||||| || | Sbjct 8729 CCGGCAAAGATGAGCCGCTGCTGATCTGGCGGGATTCCTTCTTTGTCCTGAATCTTGGCT 8788 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || |||||||| || | | | || ||| | |||| |||||| |||||||| Sbjct 8789 TTGACGTTTTCAATTGTGTCCGAA-GCTTCCACTTCCAATGTAATAGTTTTTCCAGTAAG 8847 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 |||||| ||||| |||||||| Sbjct 8848 AGTTTTCACGAAGATTTGCAT 8868 >seq530 Length=72016 Score = 98.7 bits (108), Expect = 8e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 563331 TTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTT 563390 ||| || || || ||||||| ||||||||||| ||||||||||| ||||| ||||| || Sbjct 8665 TTTACCTGCGAAGATAAGTCGCTGCTGATCAGGCGGAATTCCTTCCTTATCCTGAATCTT 8724 Query 563391 TTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450 ||||| ||| || ||||||| | | ||||| || | |||||| || || Sbjct 8725 GGCCTTTACATTCTCGATAGTATCAGAGGCCTCAACCTCGAGGGTGATAGTTTTTCCCGT 8784 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 |||||| || ||||| |||||||| Sbjct 8785 AAGAGTCTTTACGAAGATTTGCAT 8808 >seq4923 Length=15518 Score = 89.7 bits (98), Expect = 4e-12 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 550310 AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369 || || ||| | || ||| | ||||| | ||||| || | ||||||||| ||| || Sbjct 5030 AAGCAGTTTGCCCCCGAAGAGATTTCCGCCATGGTCTTGACGAAAATGAAGGAAATCGCT 5089 Query 550370 AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAAT 550429 | | | | || | ||||| | | | || || | || |||||||| || || || Sbjct 5090 GAATCCTATCTCGGCAAGGAAGTGAAGCACGCCGTTGTTACCGTACCAGCCTACTTCAAC 5149 Query 550430 GACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGT 550489 || | ||||||||||| || || || || ||| || |||||| | |||||| | || Sbjct 5150 GATGCTCAACGTCAAGCAACAAAGGACGCAGGAACGATCGCTGGATTGAATGTTGTCCGA 5209 Query 550490 ATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 |||||||| || || ||||| || || | || || || ||||| || Sbjct 5210 ATTATCAACGAGCCCACTGCCGCCGCTATCGCCTACGGTCTTGACAA 5256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027977959357270