Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq5978 96.9 4e-15 >seq5978 Length=11568 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/125 (78%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 37428 TTTTCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATA 37487 ||| |||| | |||| | ||||| || ||||| || |||||||||||||||||||||| Sbjct 5386 TTTCCTTCTC-ATCTCTGATATAGGTCTCAATAAGCTTACTATACATTTCAGAGTGAATA 5444 Query 37488 TTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTA 37547 ||||| || || || |||||||| ||||| | | ||| |||| | |||||| || || Sbjct 5445 TTTTCGATGGCAATTTGAAAACCGTAAAAGAATCGAGCCTCAGGAACTTGAACTTCTTTG 5504 Query 37548 AAAAA 37552 |||| Sbjct 5505 GAAAA 5509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592132271104920