Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq2750 118 8e-22 seq3076 98.7 8e-16 >seq2750 Length=29324 Score = 118 bits (130), Expect = 8e-22 Identities = 118/153 (77%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 101329 ACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 101388 ||| ||||| || | ||||||||||| || ||||| |||||||| || ||||| || Sbjct 8421 ACCGGCAAAGATAAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGC 8480 Query 101389 TTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAA 101448 ||| ||| |||| | ||||| || | |||||||| ||||| | ||||| || |||| Sbjct 8481 TTTCACATTTTCGATCGTGTCGGAGGCCTCCACTTCCAGAGTAATAGTTTTTCCAGTTAG 8540 Query 101449 AGTTTTTACAAATATCTGCATGGTTACGCGAAG 101481 ||||||||| || ||||||||| | ||||||| Sbjct 8541 AGTTTTTACGAAGATCTGCATGCCTCCGCGAAG 8573 Score = 100 bits (110), Expect = 2e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || ||| ||||| || | || || ||||| || || || ||||| ||||||||||| || Sbjct 10158 CTGACCGGCAAAGATAAGTCGTTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATCTT 10217 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | ||| ||| |||| | |||||| || | || || || || |||| || || ||||| Sbjct 10218 TGCTTTCACATTTTCAATAGTGTCGGAGGCCTCAACCTCGAGTGTGATTGTCTTCCCGGT 10277 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 || ||||| ||||| ||||||||| Sbjct 10278 TAGGGTTTTCACAAAGATCTGCATG 10302 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || ||| |||||||| | || || || || || ||||||||||| ||||||||||| || Sbjct 9865 CTGACCGGCAAATATAAGCCGTTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGAATCTT 9924 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| ||| | || | ||||| || | || ||||| || |||| ||| || || || Sbjct 9925 GGCTTTCACATTCTCGATTGTGTCCGAGGCCTCAACTTCCAGGGTGATCGTCTTTCCAGT 9984 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| || ||||| Sbjct 9985 CAATGTCTTCACAAAAATTTGCAT 10008 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 101329 ACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 101388 ||||||||| || | ||||| ||||| || ||||| |||||||||||||| || || Sbjct 9375 ACCTGCAAAGATAAGTCGCTGCTGATCAGGTGGAATTCCTTCTTTATCTTGTATCTTGGC 9434 Query 101389 TTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAA 101448 || ||| |||| | || ||||| | || || || | || | ||| || || || || Sbjct 9435 CTTGACATTTTCGATTGTATCAGATGCCTCAACCTCCAATGTAATCGTCTTTCCTGTCAA 9494 Query 101449 AGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 || || ||||| |||||||| | | |||||| Sbjct 9495 CGTCTTCACAAAGATCTGCATTCCTCCTCGAAGA 9528 >seq3076 Length=26571 Score = 98.7 bits (108), Expect = 8e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| || || ||||||||||| ||||| || |||||||||||||| || ||||| || Sbjct 23668 CTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGAATCTT 23727 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| |||| | || ||||| | ||| ||||| || |||| || || || || Sbjct 23728 AGCCTTCACATTTTCAATGGTATCAGAAGCTTCAACTTCGAGGGTGATGGTCTTTCCAGT 23787 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| || ||||| Sbjct 23788 AAGGGTCTTGACAAAGATTTGCAT 23811 Score = 89.7 bits (98), Expect = 4e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| || || ||||| ||||| ||||| || ||||| |||||||| || || || || Sbjct 25143 TACCAGCGAAGATCAATCGCTGCTGATCTGGGGGAATCCCTTCTTTGTCCTGGATCTTGG 25202 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 || ||| |||| | || || || | ||| ||||||||||| | || || || || | Sbjct 25203 CCTTGACATTTTCAATGGTATCTGAGGCTTCGACTTCAAGAGTAATAGTCTTTCCAGTAA 25262 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 ||| || ||||| |||||||| Sbjct 25263 GAGTCTTGACAAAGATCTGCAT 25284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396158030807511