Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2750 93.3 3e-14 seq3076 87.8 1e-12 >seq2750 Length=29324 Score = 93.3 bits (102), Expect = 3e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 48626 ACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTG 48685 ||||||||| || |||||||||||||| | |||| || || ||||| |||||| Sbjct 8421 ACCGGCAAAGATAAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGC 8480 Query 48686 TTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAA 48745 ||| ||| | | | || || |||||||| |||| ||||| |||||||| || | Sbjct 8481 TTTCACATTTTCGATCGTGTCGGAGGCCTCCACTTCCAGAGTAATAGTTTTTCCAGTTAG 8540 Query 48746 AGTTTTTACAAAAATCTGCAT 48766 ||||||||| || |||||||| Sbjct 8541 AGTTTTTACGAAGATCTGCAT 8561 >seq3076 Length=26571 Score = 87.8 bits (96), Expect = 1e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 48625 TACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTT 48684 |||| || || |||||||| || ||||| | ||||| ||||||||||| |||||| Sbjct 25450 TACCTGCGAAGATCAGTCGTTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGG 25509 Query 48685 GTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCA 48744 ||| ||| | | || || || || || || || | |||||| || ||||| || | Sbjct 25510 CTTTAACATTTTCAATAGTGTCCGAAGCTTCGACTTCAAGCGTAATAGTCTTTCCTGTTA 25569 Query 48745 AAGTTTTTACAAAAATCTGCATCGTG 48770 |||||| || ||||||||||| ||| Sbjct 25570 GAGTTTTGACGAAAATCTGCATAGTG 25595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380821890561129