Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq137 141 6e-28 seq4923 114 8e-20 seq716 105 4e-17 seq3076 95.1 8e-14 seq530 95.1 8e-14 seq2750 89.7 3e-12 seq1315 86.0 4e-11 >seq137 Length=114916 Score = 141 bits (156), Expect = 6e-28 Identities = 175/237 (74%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 474641 GAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAA 474700 |||| || || || |||||||| | || ||| | ||||| | | ||||||||| | Sbjct 58775 GAAAACAAGCAGTTCACACCGGAAGAGATCTCTGCTATGGTACTCGGAAAAATGAAAGAG 58834 Query 474701 ACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATA 474759 | || ||| || ||||||||| | ||||| | | || || | || || ||||| || Sbjct 58835 ATTGCTGAG-TCGTATCTTGGAAAGGAAGTGAAACACGCCGTCGTGACGGTACCAGCTTA 58893 Query 474760 TTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGT 474819 ||| |||||| ||||||| || || || ||||||||||||| ||||| || | || || Sbjct 58894 TTTCAATGATGCTCAACGGCAGGCCACCAAAGATGCGGGAACGATTGCTGGATTAAACGT 58953 Query 474820 TTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 | | ||||| || ||||||||||| || || || | || ||||| ||||||||||| Sbjct 58954 TGTTCGTATCATCAATGAACCAACTGCTGCTGCTATCGCATATGGGCTTGATAAGAA 59010 >seq4923 Length=15518 Score = 114 bits (126), Expect = 8e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 474641 GAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAA 474700 |||| || || ||| | || ||| | ||||| | ||||| || | |||||||| || Sbjct 5024 GAAATGAAGCAGTTTGCCCCCGAAGAGATTTCCGCCATGGTCTTGACGAAAATGAAGGAA 5083 Query 474701 ACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATAT 474760 | ||| || ||||| || | ||||| | | || || |||| || ||||| || Sbjct 5084 ATCGCTGAATCCTATCTCGGCAAGGAAGTGAAGCACGCCGTTGTTACCGTACCAGCCTAC 5143 Query 474761 TTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTT 474820 || || ||| |||||||||||||||| || || || |||| || || || | |||||| Sbjct 5144 TTCAACGATGCTCAACGTCAAGCAACAAAGGACGCAGGAACGATCGCTGGATTGAATGTT 5203 Query 474821 TTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 | || ||||| || || || || || ||||| | || || |||||||| ||||| Sbjct 5204 GTCCGAATTATCAACGAGCCCACTGCCGCCGCTATCGCCTACGGTCTTGACAAGAA 5259 >seq716 Length=63988 Score = 105 bits (116), Expect = 4e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 474734 GATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGAT 474793 ||||| || | || || |||||||| || || || |||||||||||||| || |||||| Sbjct 53399 GATGCTGTCGTCACAGTACCAGCATACTTCAACGACTCTCAACGTCAAGCCACCAAAGAT 53340 Query 474794 GCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853 || ||| ||| || ||||| ||||| | ||||| || |||||||| || || || || Sbjct 53339 GCAGGAGCAATCGCTGGTCTCAATGTCCTTCGTATCATCAATGAACCTACCGCTGCTGCC 53280 Query 474854 CTTGCTTATGGTCTTGATAAGAA 474876 | || || ||||| || ||||| Sbjct 53279 ATCGCCTACGGTCTAGACAAGAA 53257 >seq3076 Length=26571 Score = 95.1 bits (104), Expect = 8e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 || || || || || ||||| ||||| || |||||||| ||||||||||||||||| | Sbjct 25452 CCTGCGAAGATCAGTCGTTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGGCT 25511 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| ||||||||| || | | |||||| |||||||| || || || ||| Sbjct 25512 TTAACATTTTCAATAGTGTCCGAAGCTTCGACTTCAAGCGTAATAGTCTTTCCTGTTAGA 25571 Query 480753 GTCTTAACGAAAATTTG 480769 || || |||||||| || Sbjct 25572 GTTTTGACGAAAATCTG 25588 >seq530 Length=72016 Score = 95.1 bits (104), Expect = 8e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 480630 TTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTT 480689 || || || || ||||| || || |||||||| |||||||||||||| || |||||||| Sbjct 8666 TTACCTGCGAAGATAAGTCGCTGCTGATCAGGCGGAATTCCTTCCTTATCCTGAATCTTG 8725 Query 480690 TGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTG 480749 || ||| || |||||||||| | | || ||||| |||||||| || || Sbjct 8726 GCCTTTACATTCTCGATAGTATCAGAGGCCTCAACCTCGAGGGTGATAGTTTTTCCCGTA 8785 Query 480750 AGAGTCTTAACGAAAATTTG 480769 |||||||| ||||| ||||| Sbjct 8786 AGAGTCTTTACGAAGATTTG 8805 >seq2750 Length=29324 Score = 89.7 bits (98), Expect = 3e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 || ||||| ||||| || ||||||||||| ||||||||||| ||||| |||||||| | Sbjct 8422 CCGGCAAAGATAAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGCT 8481 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| ||| || || || | | ||| || ||||||||||| || || ||| Sbjct 8482 TTCACATTTTCGATCGTGTCGGAGGCCTCCACTTCCAGAGTAATAGTTTTTCCAGTTAGA 8541 Query 480753 GTCTTAACGAAAATTTG 480769 || || ||||| || || Sbjct 8542 GTTTTTACGAAGATCTG 8558 >seq1315 Length=47950 Score = 86.0 bits (94), Expect = 4e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 ||||||||||| ||||| | || || ||||| |||||||| |||||||| ||||||||| Sbjct 19753 GGTATTCCTCCAGCTCCTCGTGGTGTGCCTCAGATTGAAGTCACTTTTGACATTGATGCA 19694 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGAT 476179 || |||||| |||| || | || ||||| Sbjct 19693 AACGGTATTGTTAACGTATCCGCCCGTGAT 19664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267110131603604