Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq3076 100 4e-16 seq2750 93.3 6e-14 >seq3076 Length=26571 Score = 100 bits (110), Expect = 4e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || | |||||||| || || || | ||||| |||| ||| Sbjct 23812 AATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACCATCACCCTCGAAGTTGAAGCTTC 23753 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| ||| ||||| ||| || || || ||||||||||| |||||||| || Sbjct 23752 TGATACCATTGAAAATGTGAAGGCTAAGATTCAGGACAAAGAAGGCATTCCTCCAGATCA 23693 Query 155942 ACAAAGATTGATTTATGCCGGTAAG 155966 || | ||||| | ||||||||| Sbjct 23692 GCAGCGTTTGATCTTCGCCGGTAAG 23668 >seq2750 Length=29324 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | |||||||||||||||||||| ||||| |||| ||| Sbjct 8868 ATGCAAATCTTCGTGAAAACTCTTACTGGAAAAACTATTACATTGGAAGTGGAAGCTTCG 8809 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| ||| || || || || |||||||| || || ||||| || Sbjct 8808 GACACAATTGAAAACGTCAAAGCCAAGATTCAGGACAAAGAAGGAATCCCGCCAGATCAG 8749 Query 155943 CAAAGATTGATTTATGCCGGT 155963 || | | || | ||||||| Sbjct 8748 CAGCGGCTCATCTTTGCCGGT 8728 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | || || ||||||||||| || || || || || || || | ||| Sbjct 9165 AATGCAAATTTTCGTGAAGACGTTGACTGGAAAGACAATCACCTTGGAGGTAGAGGCTTC 9106 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| |||||||| || || ||||| || ||||| || || ||||| || Sbjct 9105 TGACACCATTGAGAACGTGAAGGCGAAGATCCAAGACAAGGAAGGAATCCCACCAGACCA 9046 Query 155942 ACAAAGATTGATTTATGCCGGTAA 155965 ||||| | |||| ||| ||||| Sbjct 9045 GCAAAGGCTCATTTTTGCAGGTAA 9022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731643994426800