Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2750 105 1e-17 >seq2750 Length=29324 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 192396 ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 192455 ||| |||||||| | || ||||||||||||||| ||||||||||| || || || ||| Sbjct 8421 ACCGGCAAAGATAAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGC 8480 Query 192456 TTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 ||| ||||| || | || || | || ||||| |||||||| ||||| ||||||| Sbjct 8481 TTTCACATTTTCGATCGTGTCGGAGGCCTCCACTTCCAGAGTAATAGTTTTTCCAGTTAG 8540 Query 192516 TGTTTTAATAAATATCTGCAT 192536 ||||| | || |||||||| Sbjct 8541 AGTTTTTACGAAGATCTGCAT 8561 Score = 93.3 bits (102), Expect = 8e-14 Identities = 116/158 (73%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||||| ||| || ||| |||||||| | || ||| ||||||||||| |||||||||| Sbjct 9360 CATCATGTAATA-TTCACCTGCAAAGATAAGTCGCTGCTGATCAGGTGGAATTCCTTCTT 9418 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 |||||||||| || || ||||| || | ||| || | || || || | |||| Sbjct 9419 TATCTTGTATCTTGGCCTTGACATTTTCGATTGTATCAGATGCCTCAACCTCCAATGTAA 9478 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | || || || || || || || | ||| ||||||||| Sbjct 9479 TCGTCTTTCCTGTCAACGTCTTCACAAAGATCTGCATT 9516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984165630001050