Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2750 122 8e-23 seq3076 105 6e-18 >seq2750 Length=29324 Score = 122 bits (134), Expect = 8e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| ||||| || ||||||||||| || ||||| || ||| || Sbjct 8561 ATGCAGATCTTCGTAAAAACTCTAACTGGAAAAACTATTACTCTGGAAGTGGAGGCCTCC 8502 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| ||||| || |||||||||||||| || || |||||| Sbjct 8501 GACACGATCGAAAATGTGAAAGCTAAGATTCAGGACAAAGAAGGAATTCCACCTGATCAA 8442 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || | ||||||||||| Sbjct 8441 CAGCGACTTATCTTTGCCGG 8422 Score = 118 bits (130), Expect = 1e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| |||||||| || || || || ||||| || || ||| || Sbjct 10301 ATGCAGATCTTTGTGAAAACCCTAACCGGGAAGACAATCACACTCGAGGTTGAGGCCTCC 10242 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| |||||| ||||| || |||||||| || || ||||| Sbjct 10241 GACACTATTGAAAATGTGAAAGCAAAGATTCAAGATAAGGAAGGAATCCCACCAGATCAG 10182 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||| | ||||||||||| Sbjct 10181 CAACGACTTATCTTTGCCGG 10162 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | ||||| || || || ||||||||||| | ||||| ||||| | Sbjct 8868 ATGCAAATCTTCGTGAAAACTCTTACTGGAAAAACTATTACATTGGAAGTGGAAGCTTCG 8809 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || ||| ||||| || |||||||||||||| || || ||||| Sbjct 8808 GACACAATTGAAAACGTCAAAGCCAAGATTCAGGACAAAGAAGGAATCCCGCCAGATCAG 8749 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || | ||||||||||| Sbjct 8748 CAGCGGCTCATCTTTGCCGG 8729 >seq3076 Length=26571 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||| || | ||||| ||||| || || ||||||||||| ||||| ||||| Sbjct 25594 ACTATGCAGATTTTCGTCAAAACTCTAACAGGAAAGACTATTACGCTTGAAGTCGAAGCT 25535 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | |||| || ||| ||||| |||||||| || ||||| || || ||| Sbjct 25534 TCGGACACTATTGAAAATGTTAAAGCCAAGATTCAAGACAAGGAGGGAATTCCCCCAGAT 25475 Query 24821 CAACAACGTTTGATCTTTGCCGG 24843 || ||||| ||||||| || || Sbjct 25474 CAGCAACGACTGATCTTCGCAGG 25452 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || |||||||| || ||||| |||||| | Sbjct 25284 ATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACTATTACTCTTGAAGTCGAAGCCTCA 25225 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || |||||||| ||||||||||| || || || ||||| Sbjct 25224 GATACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGGATTCCCCCAGATCAG 25165 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || |||||||| || || Sbjct 25164 CAGCGATTGATCTTCGCTGG 25145 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || || || || || || || |||||||| ||||| | Sbjct 23811 ATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACCATCACCCTCGAAGTTGAAGCTTCT 23752 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || ||||| || ||||||||||| || ||||| ||||| Sbjct 23751 GATACCATTGAAAATGTGAAGGCTAAGATTCAGGACAAAGAAGGCATTCCTCCAGATCAG 23692 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || ||||||||||| ||||| || Sbjct 23691 CAGCGTTTGATCTTCGCCGGTAA 23669 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || ||||| || |||||| | Sbjct 24993 ATGCAGATCTTTGTCAAAACCCTCACAGGAAAGACCATCACTCTCGAGGTCGAAGCCTCG 24934 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || |||||||| ||||| || ||||| || || || || Sbjct 24933 GATACTATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 24874 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || |||||||| || || Sbjct 24873 CAGCGATTGATCTTCGCAGG 24854 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || || ||||| || ||||| || || || Sbjct 24107 ATGCAAATCTTCGTCAAGACCCTCACAGGAAAGACAATTACCCTGGAAGTCGAGGCATCC 24048 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || ||||| || || ||||||||||| || || ||||| Sbjct 24047 GATACCATCGAAAACGTCAAGGCCAAGATTCAGGATAAAGAAGGAATTCCCCCAGATCAG 23988 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||| |||||||| || || Sbjct 23987 CAACGATTGATCTTCGCAGG 23968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449757440026440