Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq13788 118 2e-20 seq10745 113 7e-19 seq9561 96.9 5e-14 >seq13788 Length=1446 Score = 118 bits (130), Expect = 2e-20 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| |||||||||||||| ||||| || ||||||||| |||| || || || | | Sbjct 246 TGTACTTCGTGACGGCCTTGGTGCCCTCGGAAACGGCGTGCTTGGCGAGCTCTCCAGGAA 187 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || ||||| |||||||| ||||| | |||||| || ||||| | Sbjct 186 GAATCAGACGGACGGCAGTCTGGATTTCGCGAGATGAGATCGTCGAACGTTTGTTGTAGT 127 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || || || | |||| || |||| | ||| || || |||||||||| Sbjct 126 GAGCAAGACGAGATGCTTCAGCAGCGATACGTTCGAATACGTCATTCACGAACGAGTTCA 67 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||| ||||| | |||| |||| || ||| ||||| || || || || || Sbjct 66 TGATGGACATAGCTTTGGAAGAGACTCCTGTGTCAGGGTGTACTTGTTTAAGTAC 12 >seq10745 Length=2430 Score = 113 bits (124), Expect = 7e-19 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || |||||||| |||| || || || | | Sbjct 1488 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAAACGGCGTGTTTGGCGAGCTCTCCAGGAA 1547 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||||| || ||||| |||||||| ||||| | |||||| || ||||| | Sbjct 1548 GGATCAGTCGGACGGCAGTCTGGATTTCGCGAGATGAGATCGTCGAACGTTTGTTGTAGT 1607 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| || || |||| |||| || ||| | || || || ||| |||||| Sbjct 1608 GGGCCAGACGAGATGCGTCGGCAGCGATACGTTCGGAAACATCATTCACGAACCAGTTCA 1667 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||| ||||| | |||| |||| || ||| |||| || || || || || Sbjct 1668 TGATGGACATAGCTTTGGAAGAGACACCTGTGTCAGGGTCTACTTGGTTAAGTAC 1722 >seq9561 Length=3540 Score = 96.9 bits (106), Expect = 5e-14 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| |||||||||||||| ||||| || || |||||| |||| | || | | | Sbjct 1915 TGTACTTCGTGACGGCCTTGGTGCCCTCGGAAACAGCGTGCTTGGCAGGCTCTCTAGGAA 1856 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||||| || ||||| |||||||| ||||| | |||||| | ||||| | Sbjct 1855 GGATCAGTCGGACGGCAGTCTGGATTTCGCGAGATGAGATCGTCGCAAGTTTGTTGTAGT 1796 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| || || |||| |||| || ||||| | || | || |||||||||| Sbjct 1795 GAGCCAGACGAGATGCTTCGGCAGCGATACGTTCGAT-ACATC-ATCACGAACGAGTTCA 1738 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||| | ||| | |||| |||| || ||| ||||| || || || || || Sbjct 1737 TGATGGGCATAGCTTTGGAAGAGACACCTGTGTCAGGGTGTACTTGTTTAAGTAC 1683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913595226816197