Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq3076 91.5 1e-13 >seq3076 Length=26571 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 || |||||||||| ||| ||||||||| | || | ||||||||||| | || || Sbjct 24854 CCTGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCC 24913 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 || ||| | | || | || ||| ||||| || | || ||||||||||| |||||| Sbjct 24914 TTCACGTTTTCAATAGTATCCGAGGCTTCGACCTCGAGAGTGATGGTCTTTCCTGTGAGG 24973 Query 34958 GTCTTTACAAAGATCTGCAT 34977 || || |||||||||||||| Sbjct 24974 GTTTTGACAAAGATCTGCAT 24993 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 || |||||||||| || ||||||||| | || | ||||||||||| | ||||| Sbjct 24560 CCTGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATTTTAGCC 24619 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 |||||| | || | || || ||||| |||| ||| || |||||||| || ||| Sbjct 24620 TTGACGTTCTCAATGGTGTCCGAAGCTTCGACTTCAAGGGTGATTGTCTTTCCAGTAAGG 24679 Query 34958 GTCTTTACAAAGATCTGCAT 34977 ||||| || ||||||||||| Sbjct 24680 GTCTTAACGAAGATCTGCAT 24699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325593871117337