Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq716 233 1e-55 seq137 120 2e-21 >seq716 Length=63988 Score = 233 bits (258), Expect = 1e-55 Identities = 665/1012 (66%), Gaps = 10/1012 (1%) Strand=Plus/Plus Query 281468 ACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCC 281527 || |||||||| || || |||||| | |||||||| || || || | || |||| Sbjct 52393 ACCTCAATTTGCGGTACGCCTCTCGGTGCAGGTGGAATTCCGGACAGCTCGAACTTTCCA 52452 Query 281528 AGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACA 281587 || ||| || ||||| || | | ||||| || ||||| | ||||| || || Sbjct 52453 AGTAGATTGTTGTCTTTGGTCATTGCACGTTCTCCTTCGAAGACCTGGATGAGCACACCA 52512 Query 281588 GTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAA-GGAATTGTTGTGTT 281646 | || || || || || || || ||| ||||| | | | | || ||||| ||||| Sbjct 52513 GGCTGGTTGTCAGAGTAGGTGGTGAATG-TCTGGCTGGTCTTCGTTGGGATTGTGGTGTT 52571 Query 281647 TCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGT 281706 || | || | | ||||| | ||| ||||| ||||| | ||| || || ||||||| Sbjct 52572 CCTCTTGATCAGAGCTGTCATTACACCTCCAGCGGTTTCAATACCGAGTGATAGAGGAGC 52631 Query 281707 GACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTG 281765 ||||||| |||| | || || | ||| | | || | ||| ||||||||| | Sbjct 52632 CACATCAAGAAGGAGCAAATCCTGCACAGCTTC-TGACTTGTCACCGGAAAGAATAGCGG 52690 Query 281766 CTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTT 281825 |||||| ||||| || || |||||||| |||||||| || | | | ||| |||| || Sbjct 52691 CTTGAACTGCAGCTCCGTAGGCAACAGCCTCATCAGGGTTGATCGACTTATTGAGTTCTT 52750 Query 281826 TACCATTGAAAAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCA 281884 | ||| ||| |||| || || || | ||| || || |||||||||| |||||||||| Sbjct 52751 TTCCAGAGAACAAATCAGATAGCAGCT-TCTGGACTTTTGGAATACGAGTTGATCCTCCA 52809 Query 281885 ACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCA 281944 || | || || || || ||||| || |||| || | || | || ||| Sbjct 52810 ACAAGAACGATATCGTGGACCTGGCTCTTGTCCATCTTAGCGTCTCTCAGCGACTTCTCA 52869 Query 281945 ACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTA 282004 || || || | | | || | || | || || || |||||| || | |||| Sbjct 52870 ACAGGATCCATGGTGGAACGGAAGAGATCAGCGCACAGCTCCTCGAATCGGGCACGAGTA 52929 Query 282005 AGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTC 282064 | | | |||| || || ||||| | ||||||| ||| |||| || |||| | Sbjct 52930 ATGTTCGTGTAGAAATCGATGCCCTCGAAGAGTGAATCAATTTCGATCGAAGCCTGAGAC 52989 Query 282065 GAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTT 282124 || || || || | ||| || |||||||| || ||||| | || | ||| | || Sbjct 52990 GACGATGACAGAGTACGCTTGGCACGTTCGCAAGCTGTGCGGAGACGTCGCAGAGC--AC 53047 Query 282125 GCTGATTG--ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTA 282182 | ||||| || | ||| | || | || |||||||| || | || | | | Sbjct 53048 GAGGATTGGTGTTGAGATCCTTCTTGTGCTTCCTCTTGAATTCGGCGACGAAGTGGTTCA 53107 Query 282183 CAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTT 282242 | | ||| || ||||| ||||| ||||| | | || | ||| | || | | | |||| Sbjct 53108 CCATACGGTTGTCAAAGTCTTCTCCTCCAAGATGGGTGTCTCCAGCGGTGGATTTGACTT 53167 Query 282243 GGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAA 282302 || | |||||| |||| || | | | ||||| ||| || || || | ||| | Sbjct 53168 CAAAGATTCCATCCTCAATAGTAAGGATCGACACATCGAAGGTACCGCCTCCAAGATCGA 53227 Query 282303 AAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAG 282362 |||| || || || || | | || || || ||||| || || | ||||||| Sbjct 53228 AAATGAGCACGTTTCGCTCGCCGGTTCCCTTCTTGTCTAGACCGTAGGCGATGGCAGCAG 53287 Query 282363 CAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAG 282422 | || |||||||| || || | | ||||| |||||||| ||| |||||||||||| | Sbjct 53288 CGGTAGGTTCATTGATGATACGAAGGACATTGAGACCAGCGATTGCTCCTGCATCTTTGG 53347 Query 282423 TGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474 ||||||| | ||| || ||||| || ||||| || || || | || ||||| Sbjct 53348 TGGCTTGACGTTGAGAGTCGTTGAAGTATGCTGGTACTGTGACGACAGCATC 53399 >seq137 Length=114916 Score = 120 bits (132), Expect = 2e-21 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || |||||||| ||||| || | ||||||||||||||||||||| || || | | ||| Sbjct 59010 TTCTTATCAAGCCCATATGCGATAGCAGCAGCAGTTGGTTCATTGATGATACGAACAACG 58951 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || | |||||||| |||| |||||||| ||||| || | ||| | ||| || ||||| Sbjct 58950 TTTAATCCAGCAATCGTTCCCGCATCTTTGGTGGCCTGCCGTTGAGCATCATTGAAATAA 58891 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATA 282495 || || || || | ||||| | | | ||||| ||||||| ||| Sbjct 58890 GCTGGTACCGTCACGACGGCGTGTTTCACTTCCTTTCCAAGATA 58847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739406786024598