Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2750 132 9e-26 seq3076 113 9e-20 seq530 96.9 7e-15 >seq2750 Length=29324 Score = 132 bits (146), Expect = 9e-26 Identities = 114/141 (81%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || |||||||| |||| || ||||| || || |||||||| |||||||| ||||| || Sbjct 9376 CCTGCAAAGATAAGTCGCTGCTGATCAGGTGGAATTCCTTCTTTATCTTGTATCTTGGCC 9435 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || |||||||| || |||||| | || || ||||| || |||||||| ||||||||| Sbjct 9436 TTGACATTTTCGATTGTATCAGATGCCTCAACCTCCAATGTAATCGTCTTTCCTGTCAAC 9495 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| ||||| ||||||||| Sbjct 9496 GTCTTCACAAAGATCTGCATT 9516 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || |||||||| |||| ||| |||||||| || ||||||||||||||||||||||||||| Sbjct 10162 CCGGCAAAGATAAGTCGTTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATCTTTGCT 10221 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||||||||| || || | || || || | || || ||||| || || | Sbjct 10222 TTCACATTTTCAATAGTGTCGGAGGCCTCAACCTCGAGTGTGATTGTCTTCCCGGTTAGG 10281 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || ||||| |||||||| Sbjct 10282 GTTTTCACAAAGATCTGCAT 10301 Score = 116 bits (128), Expect = 7e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || ||||| || || ||||| || ||||| || ||||||||||| ||||| ||||| Sbjct 9022 TTACCTGCAAAAATGAGCCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTC 9081 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || || || ||||| || ||| || ||||| ||||| || || ||||| || ||| Sbjct 9082 GCCTTCACGTTCTCAATGGTGTCAGAAGCCTCTACCTCCAAGGTGATTGTCTTTCCAGTC 9141 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 |||||||| || || || |||||| Sbjct 9142 AACGTCTTCACGAAAATTTGCATT 9165 Score = 111 bits (122), Expect = 3e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||| || || | ||| || ||||| || || |||||||||||||||||||| ||| Sbjct 9869 CCGGCAAATATAAGCCGTTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGAATCTTGGCT 9928 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| || || || || | || ||||||| || |||||||| || ||||| Sbjct 9929 TTCACATTCTCGATTGTGTCCGAGGCCTCAACTTCCAGGGTGATCGTCTTTCCAGTCAAT 9988 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| ||||| || |||||| Sbjct 9989 GTCTTCACAAAAATTTGCATT 10009 >seq3076 Length=26571 Score = 113 bits (124), Expect = 9e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || || ||||| |||| ||| |||||||| || ||||| ||||| ||||||||||| ||| Sbjct 25452 CCTGCGAAGATCAGTCGTTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGGCT 25511 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||||||||| || || || ||| ||||| | || || ||||| ||||| | Sbjct 25512 TTAACATTTTCAATAGTGTCCGAAGCTTCGACTTCAAGCGTAATAGTCTTTCCTGTTAGA 25571 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || || || |||||||| Sbjct 25572 GTTTTGACGAAAATCTGCAT 25591 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| |||| || || || ||||| |||||||||||||| || ||||| || Sbjct 23373 CCAGCAAAGATCAGTCGCTGCTGGTCCGGAGGAATTCCTTCCTTATCCTGGATCTTGGCC 23432 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || ||||| || |||||| || || ||||| | || || ||||| || || | Sbjct 23433 TTCACGTTTTCGATGGTATCAGAAGCCTCAACTTCGAGGGTGATGGTCTTTCCAGTAAGG 23492 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| ||||| || |||||| Sbjct 23493 GTCTTAACAAAGATTTGCATT 23513 Score = 105 bits (116), Expect = 1e-17 Identities = 110/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||| ||||| | || || |||||||| || || ||||| || || || ||||| || Sbjct 25145 CCAGCGAAGATCAATCGCTGCTGATCTGGGGGAATCCCTTCTTTGTCCTGGATCTTGGCC 25204 Query 82731 TTTACATTTTCAATCGTATCATTAGG-TTCTACTTCCAAAGTTATCGTCTTGCCTGTCAA 82789 || ||||||||||| ||||| | ||| ||| ||||| | ||| || ||||| || || | Sbjct 25205 TTGACATTTTCAATGGTATC-TGAGGCTTCGACTTCAAGAGTAATAGTCTTTCCAGTAAG 25263 Query 82790 CGTCTTTACAAATATCTGCATT 82811 ||||| ||||| ||||||||| Sbjct 25264 AGTCTTGACAAAGATCTGCATT 25285 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || ||||| | | || ||||||||||| || ||||| || || |||||||| Sbjct 23669 TTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGAATCTTA 23728 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||||||||| |||||| || ||| ||||| | || || ||||| || || Sbjct 23729 GCCTTCACATTTTCAATGGTATCAGAAGCTTCAACTTCGAGGGTGATGGTCTTTCCAGTA 23788 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| ||||| || |||||| Sbjct 23789 AGGGTCTTGACAAAGATTTGCATT 23812 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| |||| |||||| || || || |||||||| ||||| |||||||| || Sbjct 24267 CCAGCAAAGATCAGTCGTTGTTGGTCCGGTGGGATTCCTTCTTTATCCTGAATCTTGGCC 24326 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || ||||| || |||||| | || ||||| | || || ||||| || || | Sbjct 24327 TTGACGTTTTCGATGGTATCAGATGCCTCGACTTCGAGGGTGATTGTCTTTCCAGTAAGA 24386 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| || || || |||||| Sbjct 24387 GTCTTGACGAAGATTTGCATT 24407 >seq530 Length=72016 Score = 96.9 bits (106), Expect = 7e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 ||| || || ||||| |||| || ||||| || || |||||||||||||| |||||||| Sbjct 8665 TTTACCTGCGAAGATAAGTCGCTGCTGATCAGGCGGAATTCCTTCCTTATCCTGAATCTT 8724 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || |||||||| || || |||||| | || || || | || || || || || || Sbjct 8725 GGCCTTTACATTCTCGATAGTATCAGAGGCCTCAACCTCGAGGGTGATAGTTTTTCCCGT 8784 Query 82787 CAACGTCTTTACAAATATCTGCATTA 82812 | |||||||| || || ||||||| Sbjct 8785 AAGAGTCTTTACGAAGATTTGCATTA 8810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981513677108897