Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq13788 104 3e-16 seq10745 98.7 1e-14 >seq13788 Length=1446 Score = 104 bits (114), Expect = 3e-16 Identities = 126/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || || ||| | |||| || |||| | || || | Sbjct 57 ATGTCCATCATGAACTCGTTCGTGAATGACGTATTCGAACGTATCGCTGCTGAAGCATCT 116 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || |||||| || |||||| | ||||| |||||||| ||||| Sbjct 117 CGTCTTGCTCACTACAACAAACGTTCGACGATCTCATCTCGCGAAATCCAGACTGCCGTC 176 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||||| | | || || || |||| ||||||||| ||||||||||||| Sbjct 177 CGTCTGATTCTTCCTGGAGAGCTCGCCAAGCACGCCGTTTCCGAGGGCACCA 228 >seq10745 Length=2430 Score = 98.7 bits (108), Expect = 1e-14 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||| ||| || || || | ||| || |||| |||| || | Sbjct 1677 ATGTCCATCATGAACTGGTTCGTGAATGATGTTTCCGAACGTATCGCTGCCGACGCATCT 1618 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | || |||||| || |||||| | ||||| |||||||| ||||| Sbjct 1617 CGTCTGGCCCACTACAACAAACGTTCGACGATCTCATCTCGCGAAATCCAGACTGCCGTC 1558 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || |||||| | | || || || |||| |||||||| ||||||||||||| Sbjct 1557 CGACTGATCCTTCCTGGAGAGCTCGCCAAACACGCCGTTTCCGAGGGCACCA 1506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175407330841526