Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3288 134 2e-26 >seq3288 Length=24717 Score = 134 bits (148), Expect = 2e-26 Identities = 200/281 (71%), Gaps = 2/281 (1%) Strand=Plus/Minus Query 69689 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTAT 69748 |||| | ||| |||| |||||| ||||| || || || || | ||||||| || |||| Sbjct 15815 ACTCGAAAATGTCAGCATGCCACGGTTCCAGGTAGATTGCGAACGCTCCCGGGCGCTTAT 15756 Query 69749 TTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATAC 69808 | || || || || | ||| | ||||||||||| || || | ||||||||||| | | Sbjct 15755 TACCGCCTTGGTCCACGTAACGCGCAGTGTTATTGTACACGCGAAGCATCGGAATCAAGC 15696 Query 69809 CATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAG 69868 |||| ||| | ||||||||||| | ||| ||| |||| | |||||| | Sbjct 15695 CATTGGATGTGCCATTTGTTCCCGCAATCAGCGATCCAGTTGCTCTGATATTATGCACGT 15636 Query 69869 ATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATA 69928 ||||||||||| || || | || ||||| || ||||| ||||||||||||| || | Sbjct 15635 TCAGACCTATTCCGCCGGCACTCTTCGAGATCAGTGCACATTGTTTCAATGTGTCGTAAA 15576 Query 69929 TACCCTCTATGCTATCATCTATCA-TGTTAAGAAGAAAACA 69968 | || | || ||| || ||| |||||| ||| ||||| Sbjct 15575 TGCCAGCAATCGAATCCTCGCTCATTGTTAA-AAGGAAACA 15536 Score = 93.3 bits (102), Expect = 6e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 68703 ATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGT 68762 ||| ||||| || ||||| || || || || | ||||| || |||| ||||| ||| Sbjct 17362 ATGAGGATTGACAATTTGGAAGTCACCGGAAAGAACTCTTCGGCTGTAGATATTTGAGGT 17303 Query 68763 ATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGG 68822 ||| || || | || || || || || ||||| ||||| ||||| || ||||||||||| Sbjct 17302 ATACGGCTCAATGGACTCGTTGTTGCCAAGAATCTGAGCTGTTGACGCCGTTGGCATAGG 17243 Query 68823 TGCCACCAATAAACTATTTCTAAGACCATGT 68853 || | || ||||| || | || ||||||| Sbjct 17242 GGCAAGCAGCAAACTGTTGCGAACACCATGT 17212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686694802149720