Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2750 93.3 4e-14 seq3288 84.2 2e-11 seq530 82.4 6e-11 >seq2750 Length=29324 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 27107 ACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTT 27166 |||||| | ||||| ||||| ||||| ||||| | || ||||| || |||||| Sbjct 8728 ACCGGCAAAGATGAGCCGCTGCTGATCTGGCGGGATTCCTTCTTTGTCCTGAATCTTGGC 8787 Query 27167 TTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAG 27226 ||| | | |||| | ||||| | ||||| ||||| | || |||| ||| || || || Sbjct 8788 TTTGACGTTTTCAATTGTGTCCGAAGCTTCCACTTCCAATGTAATAGTTTTTCCAGTAAG 8847 Query 27227 AGTTTTCACAAAGATTTGCAT 27247 ||||||||| ||||||||||| Sbjct 8848 AGTTTTCACGAAGATTTGCAT 8868 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 27107 ACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTT 27166 |||||| | || || ||||||||||| || || | || ||||| || ||||| Sbjct 8421 ACCGGCAAAGATAAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGC 8480 Query 27167 TTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAG 27226 ||||| |||| | ||||| | ||| || ||||| ||||| |||| ||| || || || Sbjct 8481 TTTCACATTTTCGATCGTGTCGGAGGCCTCCACTTCCAGAGTAATAGTTTTTCCAGTTAG 8540 Query 27227 AGTTTTCACAAAGATTTGCAT 27247 |||||| || ||||| ||||| Sbjct 8541 AGTTTTTACGAAGATCTGCAT 8561 >seq3288 Length=24717 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/221 (69%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 131744 TCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTTA--- 131800 || |||||||| |||||||| ||||||| || | ||| | || || ||||||| Sbjct 15813 TCGAAAATGTCAGCATGCCACGGTTCCAGGTAGATTGCGAACGCTCCCGGGCGCTTATTA 15754 Query 131801 CCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCG 131860 |||||||| | || | ||| | |||| ||||| ||||| | ||| || ||| || Sbjct 15753 CCGCCTTGGTCCACGTAACGCGCAGTGTTATTGTACACGCGAAGCATCGGAATCAAGCCA 15694 Query 131861 TTGGCGTTTCCATTGGTGCTCTTAATGTAGC-TGCCATTGGCTCTGATTTTGTGAACGTT 131919 |||| | ||||| || | | ||| ||| ||| | |||||||| || || ||||| Sbjct 15693 TTGGATGTGCCATTTGTTCCCGCAAT-CAGCGATCCAGTTGCTCTGATATTATGCACGTT 15635 Query 131920 GAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATT 131960 || || || || ||| | || ||||| ||||| |||| Sbjct 15634 CAGACCTATTCCGCCGGCACTCTTCGAGATCAGTGCACATT 15594 >seq530 Length=72016 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/157 (72%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 |||||| ||| | || || ||||| ||||| ||||| | || || ||||| ||||| Sbjct 8665 TTTACCTGCGAAGATAAGTCGCTGCTGATCAGGCGGAATTCCTTCCTTATCCTGAATCTT 8724 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 | || | | || | ||| || | ||| ||||| || || || |||| ||| ||||| Sbjct 8725 GGCCTTTACATTCTCGATAGTATCAGAGGCCTCAACCTCGAGGGTGATAGTTTTTCCCGT 8784 Query 27224 CAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAAAT 27260 ||||| || || ||||||||||| ||| |||||| Sbjct 8785 AAGAGTCTTTACGAAGATTTGCATTACTG--AAAAAT 8819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424805326574376