Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3076 145 9e-30 seq530 118 1e-21 seq2750 102 9e-17 >seq3076 Length=26571 Score = 145 bits (160), Expect = 9e-30 Identities = 119/145 (82%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||||||||| ||||| || ||||| || || || || ||||| | Sbjct 23812 AATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACCATCACCCTCGAAGTTGAAGCTTC 23753 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||||| |||| |||||||||| ||||||||||| || || ||||||||||| || Sbjct 23752 TGATACCATTGAAAATGTGAAGGCTAAGATTCAGGACAAAGAAGGCATTCCTCCAGATCA 23693 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||||||| | || || || |||||| Sbjct 23692 GCAGCGTTTGATCTTCGCCGGTAAG 23668 Score = 134 bits (148), Expect = 2e-26 Identities = 115/142 (81%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| ||||| ||||| || ||||| || || || || |||||| | Sbjct 23513 AATGCAAATCTTTGTTAAGACCCTTACTGGAAAGACCATCACCCTCGAAGTTGAGGCTTC 23454 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||| | ||| ||||||| || || ||||| ||||| ||||||||||| ||||| Sbjct 23453 TGATACCATCGAAAACGTGAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCGGACCA 23394 Query 27525 GCAGCGTCTAATTTTTGCTGGT 27546 |||||| || || ||||||||| Sbjct 23393 GCAGCGACTGATCTTTGCTGGT 23372 Score = 127 bits (140), Expect = 2e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| ||||| || ||||||||||||||||| || || | Sbjct 25285 AATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACTATTACTCTTGAAGTCGAAGCCTC 25226 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||||| |||| | ||||| || || |||||||| || || ||||| ||||| || Sbjct 25225 AGATACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGGATTCCCCCAGATCA 25166 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 |||||| | || || ||||||| Sbjct 25165 GCAGCGATTGATCTTCGCTGGTA 25143 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| ||||| || ||||| || || ||||| || || | Sbjct 24700 AATGCAGATCTTCGTTAAGACCCTTACTGGAAAGACAATCACCCTTGAAGTCGAAGCTTC 24641 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| || | |||||||||||||||||||||||||||||||| |||||||| Sbjct 24640 GGACACCATTGAGAACGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCCCCAGACCA 24581 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 |||||| | || || || |||| Sbjct 24580 GCAGCGCTTGATCTTCGCAGGTA 24558 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||||||||| || || || || ||||| || ||||| ||||| || | Sbjct 24994 AATGCAGATCTTTGTCAAAACCCTCACAGGAAAGACCATCACTCTCGAGGTCGAAGCCTC 24935 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| ||| ||||||| || || |||||||||||||||||||| |||||||| Sbjct 24934 GGATACTATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCA 24875 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 |||||| | || || || |||| Sbjct 24874 GCAGCGATTGATCTTCGCAGGTA 24852 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| |||||||| ||||| || ||||| || || || || || ||| || Sbjct 24407 AATGCAAATCTTCGTCAAGACTCTTACTGGAAAGACAATCACCCTCGAAGTCGAGGCATC 24348 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||| | ||| | ||||| || |||||||| || || ||||| || || ||||| Sbjct 24347 TGATACCATCGAAAACGTCAAGGCCAAGATTCAGGATAAAGAAGGAATCCCACCGGACCA 24288 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 || || || || |||||||||| Sbjct 24287 ACAACGACTGATCTTTGCTGGTA 24265 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| |||||||| || || || ||||| ||||| || || || ||| || Sbjct 24108 AATGCAAATCTTCGTCAAGACCCTCACAGGAAAGACAATTACCCTGGAAGTCGAGGCATC 24049 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | ||| | ||||| || |||||||| || || |||||||| ||||| || Sbjct 24048 CGATACCATCGAAAACGTCAAGGCCAAGATTCAGGATAAAGAAGGAATTCCCCCAGATCA 23989 Query 27525 GCAGCGTCTAATTTTTGCTGGT 27546 ||| || | || || || ||| Sbjct 23988 GCAACGATTGATCTTCGCAGGT 23967 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || ||||| || || || || ||||||||||| ||||| || || | Sbjct 25591 ATGCAGATTTTCGTCAAAACTCTAACAGGAAAGACTATTACGCTTGAAGTCGAAGCTTCG 25532 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | || || || ||||| ||||||||||||||||| ||||| ||| Sbjct 25531 GACACTATTGAAAATGTTAAAGCCAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCAG 25472 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 || || || || || || |||| Sbjct 25471 CAACGACTGATCTTCGCAGGTA 25450 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || |||||||||||||||| ||||||||| | ||||| ||| |||| ||||||||||| Sbjct 25374 GGAAAGCAACTCGAGGATGGACGTACCCTATCTGACTACAATATCCAGAAGGAATCCACC 25315 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || || | || | || ||||| |||||| Sbjct 25314 CTCCACTTGGTTCTCCGACTTCGTGGTGGA 25285 >seq530 Length=72016 Score = 118 bits (130), Expect = 1e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27404 TAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAG 27463 ||||||||||||| || ||||| ||||| || || ||||| || || ||||||||| | Sbjct 8810 TAATGCAAATCTTCGTAAAGACTCTTACGGGAAAAACTATCACCCTCGAGGTTGAGGCCT 8751 Query 27464 GTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 ||||| || | ||| | ||||| || |||||||| ||||| |||||||| || || | Sbjct 8750 CTGATACTATCGAGAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCGCCTGATC 8691 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAA 27548 ||||||| || || || || ||||| Sbjct 8690 AGCAGCGACTTATCTTCGCAGGTAA 8666 >seq2750 Length=29324 Score = 102 bits (112), Expect = 9e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || |||||| | || || ||||| || || | ||||| ||| | Sbjct 9165 AATGCAAATTTTCGTGAAGACGTTGACTGGAAAGACAATCACCTTGGAGGTAGAGGCTTC 9106 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| || ||||||| || || || |||||||| ||||| || |||||||| Sbjct 9105 TGACACCATTGAGAACGTGAAGGCGAAGATCCAAGACAAGGAAGGAATCCCACCAGACCA 9046 Query 27525 GCAGCGTCTAATTTTTGCTGGTAA 27548 ||| | || |||||||| ||||| Sbjct 9045 GCAAAGGCTCATTTTTGCAGGTAA 9022 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || || || || || ||||||||||| || || ||| | Sbjct 8561 ATGCAGATCTTCGTAAAAACTCTAACTGGAAAAACTATTACTCTGGAAGTGGAGGCCTCC 8502 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| |||| ||||| ||||||||||| || |||||||| || || || Sbjct 8501 GACACGATCGAAAATGTGAAAGCTAAGATTCAGGACAAAGAAGGAATTCCACCTGATCAA 8442 Query 27526 CAGCGTCTAATTTTTGCTGGT 27546 ||||| || || ||||| ||| Sbjct 8441 CAGCGACTTATCTTTGCCGGT 8421 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| | || || ||||| || || || || |||||| | Sbjct 10009 AATGCAAATTTTTGTGAAGACATTGACTGGAAAGACGATCACCCTGGAAGTTGAGGCCTC 9950 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| |||| || || ||||| || ||||| || ||||| |||||||| Sbjct 9949 GGACACAATCGAGAATGTGAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCAGACCA 9890 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||| || || || ||||| ||| || Sbjct 9889 GCAACGGCTTATATTTGCCGGTCAG 9865 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || ||||| || || |||||||| | || || || | Sbjct 8868 ATGCAAATCTTCGTGAAAACTCTTACTGGAAAAACTATTACATTGGAAGTGGAAGCTTCG 8809 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | || || || ||||||||||| || ||||| || ||||| ||| Sbjct 8808 GACACAATTGAAAACGTCAAAGCCAAGATTCAGGACAAAGAAGGAATCCCGCCAGATCAG 8749 Query 27526 CAGCGTCTAATTTTTGCTGGT 27546 ||||| || || ||||| ||| Sbjct 8748 CAGCGGCTCATCTTTGCCGGT 8728 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 27537 TTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGA 27596 |||| | ||||||||||| ||||| | |||||| || | || |||||| |||| ||||| Sbjct 8658 TTTTTCAGGTAAGCAACTGGAGGACGGTCGTACTCTTTCCGATTATAATATCCAGAAGGA 8599 Query 27597 ATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| || ||||| || |||| |||||||| || Sbjct 8598 GTCCACCCTCCATCTCGTACTGCGCCTTCGCGGAGG 8563 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| || ||||||| ||| ||||| | || || ||| |||| |||||||| ||| Sbjct 9254 GGAAAGCAGCTGGAGGATGGTCGCACCCTTTCGGATTACAATATCCAGAAGGAATCGACT 9195 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||||||| || |||||||||| || ||| Sbjct 9194 CTTCATCTGGTGCTGCGTCTTCGAGGAGGA 9165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570132726923760