Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2750 91.5 1e-13 seq3076 84.2 1e-11 >seq2750 Length=29324 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| || || |||||||| || ||||| ||||| || || | Sbjct 8561 ATGCAGATCTTCGTAAAAACTCTAACTGGAAAAACTATTACTCTGGAAGTGGAGGCCTCC 8502 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | ||| || ||| ||||||||||| | || || |||||| Sbjct 8501 GACACGATCGAAAATGTGAAAGCTAAGATTCAGGACAAAGAAGGAATTCCACCTGATCAA 8442 Query 23731 CAGCGTTTAATATTTGCCGG 23750 ||||| | || |||||||| Sbjct 8441 CAGCGACTTATCTTTGCCGG 8422 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||| || || |||||||| || || | ||||| || | || Sbjct 8868 ATGCAAATCTTCGTGAAAACTCTTACTGGAAAAACTATTACATTGGAAGTGGAAGCTTCG 8809 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | ||| || ||| ||||||||||| | ||||||||||| Sbjct 8808 GACACAATTGAAAACGTCAAAGCCAAGATTCAGGACAAAGAAGGAATCCCGCCAGATCAG 8749 Query 23731 CAGCGTTTAATATTTGCCGG 23750 ||||| | || |||||||| Sbjct 8748 CAGCGGCTCATCTTTGCCGG 8729 >seq3076 Length=26571 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || ||||| || ||||| || ||||| ||||||||||| | | Sbjct 23812 AATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACCATCACCCTCGAAGTTGAAGCTTC 23753 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||||| | || || ||| ||||||||||| | || |||||||| Sbjct 23752 TGATACCATTGAAAATGTGAAGGCTAAGATTCAGGACAAAGAAGGCATTCCTCCAGATCA 23693 Query 23730 ACAGCGTTTAATATTTGCCGGCAA 23753 |||||||| || || ||||| || Sbjct 23692 GCAGCGTTTGATCTTCGCCGGTAA 23669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337906929900884