Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq530 98.7 2e-15 seq2750 96.9 8e-15 seq8765 95.1 3e-14 seq277 95.1 3e-14 seq20041 93.3 1e-13 seq6219 93.3 1e-13 seq3076 91.5 4e-13 seq19390 86.0 1e-11 >seq530 Length=72016 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || |||||||||||||| || || || |||||||| |||||||| || || ||||| Sbjct 8666 TTACCTGCGAAGATAAGTCGCTGCTGATCAGGCGGAATTCCTTCCTTATCCTGAATCTTG 8725 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| ||||| || || |||| || || || | ||||| || || ||||| Sbjct 8726 GCCTTTACATTCTCGATAGTATCAGAGGCCTCAACCTCGAGGGTGATAGTTTTTCCCGTA 8785 Query 225691 AAAGTTTTTATGAACACTTGCATT 225714 | ||| |||| ||| | ||||||| Sbjct 8786 AGAGTCTTTACGAAGATTTGCATT 8809 >seq2750 Length=29324 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || || ||||| ||||| ||||| || ||||| |||||||| ||||| ||||| Sbjct 9869 CCGGCAAATATAAGCCGTTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGAATCTTGGCT 9928 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| ||||| ||||| |||| || || || | ||||||||||| || ||||| Sbjct 9929 TTCACATTCTCGATTGTGTCCGAGGCCTCAACTTCCAGGGTGATCGTCTTTCCAGTCAAT 9988 Query 225694 GTTTTTATGAACACTTGCATT 225714 || || | || | ||||||| Sbjct 9989 GTCTTCACAAAAATTTGCATT 10009 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || ||||||||||| ||||| || || ||||| ||||| ||||| || ||||| Sbjct 8422 CCGGCAAAGATAAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGCT 8481 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| |||||| ||||| |||| ||||| || | || || || || || || | | Sbjct 8482 TTCACATTTTCGATCGTGTCGGAGGCCTCCACTTCCAGAGTAATAGTTTTTCCAGTTAGA 8541 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||||| ||| | ||||| Sbjct 8542 GTTTTTACGAAGATCTGCAT 8561 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || || || || | ||| ||||| || || || |||||||||||||||||||| Sbjct 9022 TTACCTGCAAAAATGAGCCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTC 9081 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 |||||| || |||||||| || | || || || || ||||| ||||| || ||| Sbjct 9082 GCCTTCACGTTCTCAATGGTGTCAGAAGCCTCTACCTCCAAGGTGATTGTCTTTCCAGTC 9141 Query 225691 AAAGTTTTTATGAACACTTGCATT 225714 || || || | ||| | ||||||| Sbjct 9142 AACGTCTTCACGAAAATTTGCATT 9165 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || |||||||||||||| || || || || || |||||||| ||||| |||||| Sbjct 10162 CCGGCAAAGATAAGTCGTTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATCTTTGCT 10221 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| ||| || ||||| |||| || || || | ||||| ||||| || || | Sbjct 10222 TTCACATTTTCAATAGTGTCGGAGGCCTCAACCTCGAGTGTGATTGTCTTCCCGGTTAGG 10281 Query 225694 GTTTT 225698 ||||| Sbjct 10282 GTTTT 10286 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || ||||||||||| || || || || ||||| ||||| || ||||| ||||| | Sbjct 9376 CCTGCAAAGATAAGTCGCTGCTGATCAGGTGGAATTCCTTCTTTATCTTGTATCTTGGCC 9435 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| |||||| || || || | || || || || || |||||||| || ||||| Sbjct 9436 TTGACATTTTCGATTGTATCAGATGCCTCAACCTCCAATGTAATCGTCTTTCCTGTCAAC 9495 Query 225694 GTTTTTATGAACACTTGCATT 225714 || || | || | |||||| Sbjct 9496 GTCTTCACAAAGATCTGCATT 9516 >seq8765 Length=4561 Score = 95.1 bits (104), Expect = 3e-14 Identities = 98/127 (77%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||| | |||| ||| ||||||||||||| |||| |||||| | | | | Sbjct 667 GGTAAGGTTCCTCGCGTATCATCGAATTAAACCACATGCTCCTCCGCTTGTGCGGGCCCC 608 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA-CGCG 7855 ||||| || |||||||||| ||||||||| ||||| | | |||||||| | ||| ||| Sbjct 607 CGTCAATTCCTTTGAGTTTCAACCTTGCGATCGTACTCCCCAGGTGGATCACTTATCGCT 548 Query 7856 TTAGCTT 7862 || |||| Sbjct 547 TTCGCTT 541 >seq277 Length=91556 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| || || ||||||||||| || || ||||| || || ||||||||||| |||||||| Sbjct 25325 GAAGATCTGTCCATCAGTAATGGAAATCACATTGGTGGGAATATAAGCAGATACATCACC 25384 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAA 4576 |||||||| || | || || | || || || ||||||||||||| Sbjct 25385 AGCTTGTGTCTCAATGACTGGAAGAGCAGTCAGAGATCCACCACCAA 25431 >seq20041 Length=719 Score = 93.3 bits (102), Expect = 1e-13 Identities = 98/128 (77%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| |||| ||||| || ||||||||||||| ||||||||||| | | | Sbjct 594 TGGTAAGGTTCTGCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 535 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | |||||| |||| | | |||| || ||| || |||| Sbjct 534 CCGTCAATTCCTTTGAGTTTCATACTTGCGTACGTACTCCCCAGGCGGCATACTTAACGC 475 Query 7855 GTTAGCTT 7862 ||| |||| Sbjct 474 GTTGGCTT 467 >seq6219 Length=10718 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||||||||| || || ||||| | || ||||||||||| |||||||| Sbjct 6729 GAAGATTTGTCCATCAGTAATGGAAATCACATTGGAGGGAATATAAGCAGATACATCACC 6788 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575 |||||||| || | ||| || | || || | |||||||||||| Sbjct 6789 AGCTTGTGTCTCAATAACTGGAAGAGCAGTCAAAGATCCACCACCA 6834 >seq3076 Length=26571 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| |||||||| || || || ||||| || ||||||||||| ||||| Sbjct 25452 CCTGCGAAGATCAGTCGTTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGGCT 25511 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| ||| || ||||| || | ||| || || | ||| || ||||| || || | | Sbjct 25512 TTAACATTTTCAATAGTGTCCGAAGCTTCGACTTCAAGCGTAATAGTCTTTCCTGTTAGA 25571 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||| | ||| | ||||| Sbjct 25572 GTTTTGACGAAAATCTGCAT 25591 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||| ||||| |||||||||||||| || || || ||||| || || || ||||| | Sbjct 24267 CCAGCAAAGATCAGTCGTTGTTGGTCCGGTGGGATTCCTTCTTTATCCTGAATCTTGGCC 24326 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || || ||||||||| || || | || || || | ||||| ||||| || || | | Sbjct 24327 TTGACGTTTTCGATGGTATCAGATGCCTCGACTTCGAGGGTGATTGTCTTTCCAGTAAGA 24386 Query 225694 GTTTTTATGAACACTTGCATT 225714 || || | ||| | ||||||| Sbjct 24387 GTCTTGACGAAGATTTGCATT 24407 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||||||||| | ||| || || || || ||||| ||||| ||||| |||||||| | Sbjct 25145 CCAGCGAAGATCAATCGCTGCTGATCTGGGGGAATCCCTTCTTTGTCCTGGATCTTGGCC 25204 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| ||| ||||| ||||||| ||| || || | || || ||||| || || | | Sbjct 25205 TTGACATTTTCAATGGTATCTGAGGCTTCGACTTCAAGAGTAATAGTCTTTCCAGTAAGA 25264 Query 225694 GTTTTTATGAACACTTGCATT 225714 || || | || | |||||| Sbjct 25265 GTCTTGACAAAGATCTGCATT 25285 >seq19390 Length=764 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/103 (81%), Gaps = 3/103 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||| | |||||||||||||||| | |||||||| | || ||| | ||||| Sbjct 299 TGAGAGGTTGAACGGCCACATTGGGACTGAGATACGGCCCA-GACTCCTACGGGAGGCAG 357 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAA 6868 |||||| ||||||| | |||||||||||||| ||| | || || Sbjct 358 CAGTGGGGAATATTGGGCAATGGGCGAAAGCCTGACCCAGCAA 400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192150393856562