Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq5978 93.3 4e-14 >seq5978 Length=11568 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 4818 ATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGA 4877 ||||| || || || || |||||||||||||| || |||||||| || ||||| ||| Sbjct 5403 ATATAGGTCTCAATAAGCTTACTATACATTTCAGAGTGAATATTTTCGATGGCAATTTGA 5462 Query 4878 AATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTAC 4933 || ||||||||| ||| ||| || | ||||||||||| || |||| | ||| || Sbjct 5463 AAACCGTAAAAGAATCGAGCCTCAGGAACTTGAACTTCTTTGGAAAAGCGTTCCAC 5518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426919884084359