Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3288 113 6e-20 >seq3288 Length=24717 Score = 113 bits (124), Expect = 6e-20 Identities = 195/281 (69%), Gaps = 2/281 (1%) Strand=Plus/Minus Query 78097 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTAT 78156 |||| | ||| |||| |||||| ||||| || || ||||| | |||| || || |||| Sbjct 15815 ACTCGAAAATGTCAGCATGCCACGGTTCCAGGTAGATTGCGAACGCTCCCGGGCGCTTAT 15756 Query 78157 TACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 78216 |||| || || || | || | || |||||||| || || | | ||| ||||| | | Sbjct 15755 TACCGCCTTGGTCCACGTAACGCGCAGTGTTATTGTACACGCGAAGCATCGGAATCAAGC 15696 Query 78217 CGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGG 78276 | || ||||| ||||||||||| | ||| |||| |||| | |||||| | | Sbjct 15695 CATTGGATGTGCCATTTGTTCCCGCAATCAGCGATCCAGTTGCTCTGATATTATGCACGT 15636 Query 78277 ATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGA 78336 | |||||||| || || |||| || || || || || |||||||||| ||||| | Sbjct 15635 TCAGACCTATTCCGCCGGCACTCTTCGAGATCAGTGCACATTGTTTCAATGTGTCGTAAA 15576 Query 78337 TACCCTCTATACTGTCATCCATCA-TGTTAAGAAGAAAACA 78376 | || | || || || ||| |||||| ||| ||||| Sbjct 15575 TGCCAGCAATCGAATCCTCGCTCATTGTTAA-AAGGAAACA 15536 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 77111 ATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGT 77170 ||||||||| || ||||| || || || || | ||||| || |||| ||||| ||| Sbjct 17362 ATGAGGATTGACAATTTGGAAGTCACCGGAAAGAACTCTTCGGCTGTAGATATTTGAGGT 17303 Query 77171 ATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGG 77230 ||| || || | || || ||||| || | ||| ||||| || || || ||||||||||| Sbjct 17302 ATACGGCTCAATGGACTCGTTGTTGCCAAGAATCTGAGCTGTTGACGCCGTTGGCATAGG 17243 Query 77231 TGCCACCAATAAACTATTTCTGAGACCATGT 77261 || | || ||||| || | | ||||||| Sbjct 17242 GGCAAGCAGCAAACTGTTGCGAACACCATGT 17212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694452384618720