Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3288 125 1e-23 >seq3288 Length=24717 Score = 125 bits (138), Expect = 1e-23 Identities = 198/281 (70%), Gaps = 2/281 (1%) Strand=Plus/Minus Query 76692 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTAT 76751 |||| | ||| |||| |||||| ||||| || || || || | | ||||| || |||| Sbjct 15815 ACTCGAAAATGTCAGCATGCCACGGTTCCAGGTAGATTGCGAACGCTCCCGGGCGCTTAT 15756 Query 76752 TACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGC 76811 |||| || || || | || | ||||||||||| || || | | ||| ||||| | || Sbjct 15755 TACCGCCTTGGTCCACGTAACGCGCAGTGTTATTGTACACGCGAAGCATCGGAATCAAGC 15696 Query 76812 CGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAG 76871 | || ||||| ||||||||||| | ||| |||| ||| | |||||| | Sbjct 15695 CATTGGATGTGCCATTTGTTCCCGCAATCAGCGATCCAGTTGCTCTGATATTATGCACGT 15636 Query 76872 ATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGA 76931 || |||||||| || || | || ||||| || ||||| ||||||||||||| || | Sbjct 15635 TCAGACCTATTCCGCCGGCACTCTTCGAGATCAGTGCACATTGTTTCAATGTGTCGTAAA 15576 Query 76932 TGCCCTCTATACTATCATCCATCA-TGTTAAGAAGAAAACA 76971 |||| | || ||| || ||| |||||| ||| ||||| Sbjct 15575 TGCCAGCAATCGAATCCTCGCTCATTGTTAA-AAGGAAACA 15536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712712294199360