Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq3076 102 6e-17 seq2750 91.5 1e-13 >seq3076 Length=26571 Score = 102 bits (112), Expect = 6e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| ||||| |||||||||||||||||||||| ||| | ||||| || ||| ||||| Sbjct 23668 CTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGAATCTT 23727 Query 44254 CTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 ||||| || | ||||| || | | ||| || || | || || |||||||| || Sbjct 23728 AGCCTTCACATTTTCAATGGTATCAGAAGCTTCAACTTCGAGGGTGATGGTCTTTCCAGT 23787 Query 44314 GAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || ||||||||||| Sbjct 23788 AAGGGTCTTGACAAAGATTTGCAT 23811 Score = 95.1 bits (104), Expect = 9e-15 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || || |||||||| || |||||||||| || | ||||| || ||| ||||| | Sbjct 23968 CCTGCGAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGAATCTTGGCC 24027 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 || | || | ||||| |||| | || || |||| ||||| |||||||| |||||| Sbjct 24028 TTGACGTTTTCGATGGTATCGGATGCCTCGACTTCCAGGGTAATTGTCTTTCCTGTGAGG 24087 Query 44318 GTCTTCACGAAGATTTGCAT 44337 ||||| |||||||||||||| Sbjct 24088 GTCTTGACGAAGATTTGCAT 24107 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || |||||||||| |||||||| || | ||| | |||||||| ||| ||||| | Sbjct 23373 CCAGCAAAGATCAGTCGCTGCTGGTCCGGAGGAATTCCTTCCTTATCCTGGATCTTGGCC 23432 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 |||| || | ||||| || | | || || || | || || |||||||| || ||| Sbjct 23433 TTCACGTTTTCGATGGTATCAGAAGCCTCAACTTCGAGGGTGATGGTCTTTCCAGTAAGG 23492 Query 44318 GTCTTCACGAAGATTTGCAT 44337 ||||| || ||||||||||| Sbjct 23493 GTCTTAACAAAGATTTGCAT 23512 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || || |||||||| ||||||||||||| || | ||||| || ||| ||||| | Sbjct 25145 CCAGCGAAGATCAATCGCTGCTGATCTGGGGGAATCCCTTCTTTGTCCTGGATCTTGGCC 25204 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 || | || | ||||| || | || ||| || || | ||||| |||||||| || || Sbjct 25205 TTGACATTTTCAATGGTATCTGAGGCTTCGACTTCAAGAGTAATAGTCTTTCCAGTAAGA 25264 Query 44318 GTCTTCACGAAGATTTGCAT 44337 ||||| || ||||| ||||| Sbjct 25265 GTCTTGACAAAGATCTGCAT 25284 >seq2750 Length=29324 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 ||||||||||| | ||||||||||||| || | ||||| || ||| ||||| || Sbjct 8729 CCGGCAAAGATGAGCCGCTGCTGATCTGGCGGGATTCCTTCTTTGTCCTGAATCTT-GGC 8787 Query 44258 TTCAATG-TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 || | | || | || ||||| | | |||||| |||| ||||| || ||||| || || Sbjct 8788 TTTGACGTTTTCAATTGTGTCCGAAGCTTCCACTTCCAATGTAATAGTTTTTCCAGTAAG 8847 Query 44317 GGTCTTCACGAAGATTTGCATG 44338 || |||||||||||||||||| Sbjct 8848 AGTTTTCACGAAGATTTGCATG 8869 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 ||||||||||| | || |||||||||| || | |||||||| || ||||| ||| Sbjct 10162 CCGGCAAAGATAAGTCGTTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATCTT-TGC 10220 Query 44258 -TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 |||| || | || ||||||| || || ||||| | || || ||||| || || || Sbjct 10221 TTTCACATTTTCAATAGTGTCGGAGGCCTCAACCTCGAGTGTGATTGTCTTCCCGGTTAG 10280 Query 44317 GGTCTTCACGAAGATTTGCATGATG 44341 ||| ||||| ||||| |||||| || Sbjct 10281 GGTTTTCACAAAGATCTGCATGCTG 10305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359881053253491