Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3076 131 4e-25 seq2750 131 4e-25 seq530 129 1e-24 >seq3076 Length=26571 Score = 131 bits (144), Expect = 4e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || ||||| || ||||||||||| || || || || Sbjct 24403 CAAATCTTCGTCAAGACTCTTACTGGAAAGACAATCACCCTCGAAGTCGAGGCATCTGAT 24344 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||||||||| |||||||||||||| |||||||| ||| Sbjct 24343 ACCATCGAAAACGTCAAGGCCAAGATTCAGGATAAAGAAGGAATCCCACCGGACCAACAA 24284 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| ||||| || || Sbjct 24283 CGACTGATCTTTGCTGG 24267 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||||||||| || || ||||| || || || || || Sbjct 24104 CAAATCTTCGTCAAGACCCTCACAGGAAAGACAATTACCCTGGAAGTCGAGGCATCCGAT 24045 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||||||||| ||||||||||| || || || |||||| Sbjct 24044 ACCATCGAAAACGTCAAGGCCAAGATTCAGGATAAAGAAGGAATTCCCCCAGATCAGCAA 23985 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | |||||||| || Sbjct 23984 CGATTGATCTTCGCAGG 23968 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || ||||| || ||||||||||| || || || || Sbjct 23509 CAAATCTTTGTTAAGACCCTTACTGGAAAGACCATCACCCTCGAAGTTGAGGCTTCTGAT 23450 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||| ||||| || |||||||| |||||||||||||| Sbjct 23449 ACCATCGAAAACGTGAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCGGACCAGCAG 23390 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| ||||| || || Sbjct 23389 CGACTGATCTTTGCTGG 23373 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| ||||||||||| || ||||| |||||||| ||| ||| || Sbjct 24990 CAGATCTTTGTCAAAACCCTCACAGGAAAGACCATCACTCTCGAGGTCGAAGCCTCGGAT 24931 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || ||||| |||||||| || ||||| || || |||||||| Sbjct 24930 ACTATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAGCAG 24871 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | |||||||| || Sbjct 24870 CGATTGATCTTCGCAGG 24854 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| |||||||| |||||||| || || || || || || ||| || ||| Sbjct 25588 CAGATTTTCGTCAAAACTCTAACAGGAAAGACTATTACGCTTGAAGTCGAAGCTTCGGAC 25529 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| |||||||| ||||| || ||||| || || || |||||| Sbjct 25528 ACTATTGAAAATGTTAAAGCCAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCAGCAA 25469 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| |||||||| || Sbjct 25468 CGACTGATCTTCGCAGG 25452 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || ||||| || ||||||||||| || ||| || || Sbjct 23808 CAAATCTTTGTCAAGACCCTTACTGGAAAGACCATCACCCTCGAAGTTGAAGCTTCTGAT 23749 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || |||||||||||||||||||| || ||||| || ||||| Sbjct 23748 ACCATTGAAAATGTGAAGGCTAAGATTCAGGACAAAGAAGGCATTCCTCCAGATCAGCAG 23689 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | ||||||||||| || Sbjct 23688 CGTTTGATCTTCGCCGGTAA 23669 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || ||||| || |||||||| || || ||| || ||| Sbjct 24696 CAGATCTTCGTTAAGACCCTTACTGGAAAGACAATCACCCTTGAAGTCGAAGCTTCGGAC 24637 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| || ||||||||||| || ||||| || || |||||||| Sbjct 24636 ACCATTGAGAACGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCCCCAGACCAGCAG 24577 Query 178044 CGACTTATCTTCGCCGG 178060 || | |||||||| || Sbjct 24576 CGCTTGATCTTCGCAGG 24560 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| || ||||| || || || || || || ||| |||||| Sbjct 25281 CAGATCTTTGTCAAGACTCTTACTGGAAAGACTATTACTCTTGAAGTCGAAGCCTCAGAT 25222 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| |||||||||||||| || || || || ||||| Sbjct 25221 ACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGGATTCCCCCAGATCAGCAG 25162 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | |||||||| || Sbjct 25161 CGATTGATCTTCGCTGG 25145 >seq2750 Length=29324 Score = 131 bits (144), Expect = 4e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||||||||| || |||||||| || || | || |||||| || ||| Sbjct 8865 CAAATCTTCGTGAAAACTCTTACTGGAAAAACTATTACATTGGAAGTGGAAGCTTCGGAC 8806 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||||||| |||||||||||||||||||||||||| || || ||||| Sbjct 8805 ACAATTGAAAACGTCAAAGCCAAGATTCAGGACAAAGAAGGAATCCCGCCAGATCAGCAG 8746 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||| ||||| Sbjct 8745 CGGCTCATCTTTGCCGG 8729 Score = 122 bits (134), Expect = 2e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| |||||||| || |||||||| || || || || ||||| ||| ||| Sbjct 8558 CAGATCTTCGTAAAAACTCTAACTGGAAAAACTATTACTCTGGAAGTGGAGGCCTCCGAC 8499 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| ||||||||||||||||||||||| || || || || || Sbjct 8498 ACGATCGAAAATGTGAAAGCTAAGATTCAGGACAAAGAAGGAATTCCACCTGATCAACAG 8439 Query 178044 CGACTTATCTTCGCCGG 178060 ||||||||||| ||||| Sbjct 8438 CGACTTATCTTTGCCGG 8422 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| || || || || || ||||| |||||||| || ||| ||| Sbjct 10298 CAGATCTTTGTGAAAACCCTAACCGGGAAGACAATCACACTCGAGGTTGAGGCCTCCGAC 10239 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||||||||| || || ||||||||||| || || |||||| Sbjct 10238 ACTATTGAAAATGTGAAAGCAAAGATTCAAGATAAGGAAGGAATCCCACCAGATCAGCAA 10179 Query 178044 CGACTTATCTTCGCCGG 178060 ||||||||||| ||||| Sbjct 10178 CGACTTATCTTTGCCGG 10162 Score = 113 bits (124), Expect = 1e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||| || | || ||||| ||||||||||| || || || ||| ||| Sbjct 10005 CAAATTTTTGTGAAGACATTGACTGGAAAGACGATCACCCTGGAAGTTGAGGCCTCGGAC 9946 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || ||| |||||||| || || ||||| || || || ||||||||| Sbjct 9945 ACAATCGAGAATGTGAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCAGACCAGCAA 9886 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| || ||||| Sbjct 9885 CGGCTTATATTTGCCGG 9869 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || | || ||||| || |||||| | ||||| || || ||| Sbjct 9161 CAAATTTTCGTGAAGACGTTGACTGGAAAGACAATCACCTTGGAGGTAGAGGCTTCTGAC 9102 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || ||||| || ||||| ||||||||||| || ||||||||| Sbjct 9101 ACCATTGAGAACGTGAAGGCGAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAGCAA 9042 Query 178044 CGACTTATCTTCGCCGGAAA 178063 | || || || || || || Sbjct 9041 AGGCTCATTTTTGCAGGTAA 9022 Score = 86.0 bits (94), Expect = 2e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | |||||||| ||||| || | ||||| || || || Sbjct 9512 CAGATCTTTGTGAAGACGTTGACAGGAAAGACGATTACATTGGAGGTTGAGGCATCTGAT 9453 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| ||||| || || ||||||||||| || || || ||||| Sbjct 9452 ACAATCGAAAATGTCAAGGCCAAGATACAAGATAAAGAAGGAATTCCACCTGATCAGCAG 9393 Query 178044 CGACTTATCTTCGCCGG 178060 ||||||||||| || || Sbjct 9392 CGACTTATCTTTGCAGG 9376 >seq530 Length=72016 Score = 129 bits (142), Expect = 1e-24 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || |||||||| |||||||||||||| || ||| || Sbjct 8805 CAAATCTTCGTAAAGACTCTTACGGGAAAAACTATCACCCTCGAGGTTGAGGCCTCTGAT 8746 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || ||||||||||| || |||||||| || || || ||||| Sbjct 8745 ACTATCGAGAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCGCCTGATCAGCAG 8686 Query 178044 CGACTTATCTTCGCCGGAAAA 178064 |||||||||||||| || ||| Sbjct 8685 CGACTTATCTTCGCAGGTAAA 8665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203346817406062