Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq1193 95.1 1e-14
seq153 91.5 2e-13
seq2432 89.7 5e-13
seq12137 82.4 8e-11
>seq1193
Length=173371
Score = 95.1 bits (104), Expect = 1e-14
Identities = 107/141 (76%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| ||||| |||||||| ||||| ||||| |||| || |||||| |
Sbjct 27093 ATGCAAATCTTCGTGAAAACCCTCACGGGAAAAACGATCACACTCGAGGTGGAAGCCTCT 27152
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | || || | | |||| ||| || | ||||| || || || || |||| ||
Sbjct 27153 GATACGATTGAGAATG-TGAAGGCAAAGATCCAGGACAAGGAAGGAATTCCACCGGATCA 27211
Query 40809 GCAACGACTCATCTACGCGGG 40829
|||||||||||||| ||| ||
Sbjct 27212 GCAACGACTCATCTTCGCCGG 27232
Score = 87.8 bits (96), Expect = 2e-12
Identities = 106/142 (75%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || || || || ||||| || || || |||||||| | || |||||||| |
Sbjct 29029 AATGCAGATCTTTGTGAAGACGCTGACAGGAAAGACCATCACATTGGAAGTCGAAGCATC 29088
Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
||||| | | |||| | |||| || || | ||||| ||||||||||| | ||||
Sbjct 29089 CGACACGATCGAGAACG-TGAAGGCGAAGATCCAAGACAAGGAGGGCATCCCTCCAGACC 29147
Query 40808 AGCAACGACTCATCTACGCGGG 40829
|||| |||||||||| ||| ||
Sbjct 29148 AGCAGCGACTCATCTTCGCCGG 29169
Score = 84.2 bits (92), Expect = 2e-11
Identities = 107/145 (74%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
||||||||| ||||| || || || || || || ||||||||| | || || || ||| |
Sbjct 31226 AATGCAAATCTTCGTGAAGACACTGACAGGGAAGACCATCACCTTAGAGGTTGAGGCCTC 31285
Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
|||| | | |||| | |||| || || | ||||| || ||||| || | ||||
Sbjct 31286 TGACACAATCGAGAACG-TGAAGGCGAAGATCCAAGACAAGGAAGGCATTCCACCAGACC 31344
Query 40808 AGCAACGACTCATCTACGCGGGCAA 40832
||||||||||||||| ||| || ||
Sbjct 31345 AGCAACGACTCATCTTCGCCGGTAA 31369
>seq153
Length=425603
Score = 91.5 bits (100), Expect = 2e-13
Identities = 149/212 (70%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || ||||| || ||| | || || || || | |||| | || || |||| |
Sbjct 198093 AATGCAGATCTTCGTGAAGACGTTGACCGGAAAGACGACCACCCTAGAGGTTCAAGCATC 198034
Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
|| | | | |||| | |||| || || | ||||| || || || || | ||||
Sbjct 198033 TGAGACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCACCAGACC 197975
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
||||||| ||||||| || | ||||||||| || || | | ||| || ||||| |
Sbjct 197974 AGCAACGTCTCATCTTTGCCGACAAACAGCTCGAGGATGGACACACTCTTTCAGACTATA 197915
Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
|||||||||| ||| ||| |||||||| |||
Sbjct 197914 ACATCCAGAAAGAGTCCATACTGCATCTGGTG 197883
>seq2432
Length=89687
Score = 89.7 bits (98), Expect = 5e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| ||||||||||| |||||||| || || ||||||||| | || ||||||||| |
Sbjct 6464 AATGCAGATATTCGTAAAGACGCTCACTGGGAAGACCATCACCCTGGAGGTCGAAGCCTC 6405
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | | |||||| || || | ||||||||||| || || | || ||
Sbjct 6404 AGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGGATTCCTCCTGATCA 6345
Query 40809 GCAACGACTCATCTACGCGGGCAA 40832
||| || | || | ||| || ||
Sbjct 6344 GCAGCGTTTGATTTTCGCCGGTAA 6321
>seq12137
Length=1209
Score = 82.4 bits (90), Expect = 8e-11
Identities = 98/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || |||||||| || || |||||||| | || ||||| ||| |
Sbjct 1138 ATGCAGATCTTCGTTAAGACGCTCACTGGAAAGACCATCACTCTGGAAGTCGAGGCCTCA 1079
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | |||| ||||||| ||||| ||||| || || | || |||
Sbjct 1078 GACACCATCGAGAATGTGAAGGCCAAAATTCAAGACAAGGAGGGAATTCCTCCAGATCAG 1019
Query 40810 CAACGACTCATCT 40822
|||||||| ||||
Sbjct 1018 CAACGACTGATCT 1006
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515066907644720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |