Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1193 95.1 1e-14 seq153 91.5 2e-13 seq2432 89.7 5e-13 seq12137 82.4 8e-11 >seq1193 Length=173371 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| |||||||| ||||| ||||| |||| || |||||| | Sbjct 27093 ATGCAAATCTTCGTGAAAACCCTCACGGGAAAAACGATCACACTCGAGGTGGAAGCCTCT 27152 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || || | | |||| ||| || | ||||| || || || || |||| || Sbjct 27153 GATACGATTGAGAATG-TGAAGGCAAAGATCCAGGACAAGGAAGGAATTCCACCGGATCA 27211 Query 40809 GCAACGACTCATCTACGCGGG 40829 |||||||||||||| ||| || Sbjct 27212 GCAACGACTCATCTTCGCCGG 27232 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || ||||| || || || |||||||| | || |||||||| | Sbjct 29029 AATGCAGATCTTTGTGAAGACGCTGACAGGAAAGACCATCACATTGGAAGTCGAAGCATC 29088 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | |||| | |||| || || | ||||| ||||||||||| | |||| Sbjct 29089 CGACACGATCGAGAACG-TGAAGGCGAAGATCCAAGACAAGGAGGGCATCCCTCCAGACC 29147 Query 40808 AGCAACGACTCATCTACGCGGG 40829 |||| |||||||||| ||| || Sbjct 29148 AGCAGCGACTCATCTTCGCCGG 29169 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || || || || || ||||||||| | || || || ||| | Sbjct 31226 AATGCAAATCTTCGTGAAGACACTGACAGGGAAGACCATCACCTTAGAGGTTGAGGCCTC 31285 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | |||| | |||| || || | ||||| || ||||| || | |||| Sbjct 31286 TGACACAATCGAGAACG-TGAAGGCGAAGATCCAAGACAAGGAAGGCATTCCACCAGACC 31344 Query 40808 AGCAACGACTCATCTACGCGGGCAA 40832 ||||||||||||||| ||| || || Sbjct 31345 AGCAACGACTCATCTTCGCCGGTAA 31369 >seq153 Length=425603 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || ||| | || || || || | |||| | || || |||| | Sbjct 198093 AATGCAGATCTTCGTGAAGACGTTGACCGGAAAGACGACCACCCTAGAGGTTCAAGCATC 198034 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | | |||| | |||| || || | ||||| || || || || | |||| Sbjct 198033 TGAGACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCACCAGACC 197975 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||||| ||||||| || | ||||||||| || || | | ||| || ||||| | Sbjct 197974 AGCAACGTCTCATCTTTGCCGACAAACAGCTCGAGGATGGACACACTCTTTCAGACTATA 197915 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||| ||| ||| |||||||| ||| Sbjct 197914 ACATCCAGAAAGAGTCCATACTGCATCTGGTG 197883 >seq2432 Length=89687 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| ||||||||||| |||||||| || || ||||||||| | || ||||||||| | Sbjct 6464 AATGCAGATATTCGTAAAGACGCTCACTGGGAAGACCATCACCCTGGAGGTCGAAGCCTC 6405 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||||| || || | ||||||||||| || || | || || Sbjct 6404 AGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGGATTCCTCCTGATCA 6345 Query 40809 GCAACGACTCATCTACGCGGGCAA 40832 ||| || | || | ||| || || Sbjct 6344 GCAGCGTTTGATTTTCGCCGGTAA 6321 >seq12137 Length=1209 Score = 82.4 bits (90), Expect = 8e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || |||||||| || || |||||||| | || ||||| ||| | Sbjct 1138 ATGCAGATCTTCGTTAAGACGCTCACTGGAAAGACCATCACTCTGGAAGTCGAGGCCTCA 1079 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| ||||||| ||||| ||||| || || | || ||| Sbjct 1078 GACACCATCGAGAATGTGAAGGCCAAAATTCAAGACAAGGAGGGAATTCCTCCAGATCAG 1019 Query 40810 CAACGACTCATCT 40822 |||||||| |||| Sbjct 1018 CAACGACTGATCT 1006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515066907644720