Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq2432 86.0 5e-12
seq1193 82.4 7e-11
>seq2432
Length=89687
Score = 86.0 bits (94), Expect = 5e-12
Identities = 109/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 118593 TGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATT 118652
|| || || || |||| | ||||||||||| ||||| || |||||||||||| |||
Sbjct 8078 TGCTTACCCGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGAATC 8137
Query 118653 TTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCG 118712
||| || || | ||||| |||||| | | |||||| || | ||| | || || ||
Sbjct 8138 TTTGCCTTGACGTTTTCGATGGTGTCTGAGGCCTCGACTTCCAGGGTGATTGTCTTTCCA 8197
Query 118713 GTCAGAGTTTTTACAAAAATCTGCATGGCT 118742
|| || || || || || ||||||||| ||
Sbjct 8198 GTGAGCGTCTTAACGAAGATCTGCATGCCT 8227
>seq1193
Length=173371
Score = 82.4 bits (90), Expect = 7e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 118608 ATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGT 118667
||||||||||| ||||| ||||| ||||| |||||||| ||| || || || |
Sbjct 29753 ATGAGACGCTGTTGATCTGGAGGGATGCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTC 29694
Query 118668 TCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 118727
|||| ||||| | | ||| ||||||| || | ||| || ||||||| ||||| ||
Sbjct 29693 TCGATCGTGTCAGAGGCCTCAACCTCGAGTGTGATCGTCTTTCCGGTCAACGTTTTCACG 29634
Query 118728 AAAATCTGCATGGCT 118742
|| || |||||| ||
Sbjct 29633 AAGATTTGCATGCCT 29619
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433705371027724
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |