Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2432 86.0 5e-12 seq1193 82.4 7e-11 >seq2432 Length=89687 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 118593 TGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATT 118652 || || || || |||| | ||||||||||| ||||| || |||||||||||| ||| Sbjct 8078 TGCTTACCCGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGAATC 8137 Query 118653 TTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCG 118712 ||| || || | ||||| |||||| | | |||||| || | ||| | || || || Sbjct 8138 TTTGCCTTGACGTTTTCGATGGTGTCTGAGGCCTCGACTTCCAGGGTGATTGTCTTTCCA 8197 Query 118713 GTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || || || || || || ||||||||| || Sbjct 8198 GTGAGCGTCTTAACGAAGATCTGCATGCCT 8227 >seq1193 Length=173371 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 118608 ATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGT 118667 ||||||||||| ||||| ||||| ||||| |||||||| ||| || || || | Sbjct 29753 ATGAGACGCTGTTGATCTGGAGGGATGCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTC 29694 Query 118668 TCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 118727 |||| ||||| | | ||| ||||||| || | ||| || ||||||| ||||| || Sbjct 29693 TCGATCGTGTCAGAGGCCTCAACCTCGAGTGTGATCGTCTTTCCGGTCAACGTTTTCACG 29634 Query 118728 AAAATCTGCATGGCT 118742 || || |||||| || Sbjct 29633 AAGATTTGCATGCCT 29619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433705371027724