Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 1e-14 seq2382 89.7 6e-13 seq354 89.7 6e-13 seq700 87.8 2e-12 seq2992 86.0 7e-12 seq2322 86.0 7e-12 seq2301 86.0 7e-12 seq1401 86.0 7e-12 seq1193 86.0 7e-12 seq288 86.0 7e-12 seq121 86.0 7e-12 seq60 84.2 3e-11 >seq1 Length=1245440 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/84 (86%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| || |||| |||| |||||| |||||| |||||| | ||||||||||| | Sbjct 738481 ATGCAAAACTT-CTCCCCGGCCGGGAATTGAACCCGGGTCTCGCACGTGACAGGCGCGGA 738539 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||||||| Sbjct 738540 TACTCACCACTATACTACCGAGGA 738563 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||||||| ||||||||||| Sbjct 762245 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCAC 762186 Query 60124 TATACTACCGAGGA 60137 |||||||||||||| Sbjct 762185 TATACTACCGAGGA 762172 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| ||| |||||| |||||| |||||| | ||||||||||| ||||||||||||| Sbjct 739190 CTCCCCGGGCGGGAATTGAACCCGGGTCTCGCACGTGACAGGCGCCGATACTCACCACTA 739249 Query 60126 TACTACCGAGGAT 60138 ||||||||||||| Sbjct 739250 TACTACCGAGGAT 739262 >seq2382 Length=92613 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| |||||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 90340 ATGCAAAACATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 90399 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||||||| Sbjct 90400 TACTCACCACTATACTACCGAGGA 90423 >seq354 Length=322581 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| |||||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 169834 ATGCAAAACATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 169775 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||||||| Sbjct 169774 TACTCACCACTATACTACCGAGGA 169751 >seq700 Length=239978 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||| || ||||||||||| Sbjct 189866 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCAC 189807 Query 60124 TATACTACCGAGGATTGA 60141 ||||||||||||||| || Sbjct 189806 TATACTACCGAGGATCGA 189789 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||| || ||||||||||| Sbjct 187836 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCAC 187777 Query 60124 TATACTACCGAGGAT 60138 ||||||||||||||| Sbjct 187776 TATACTACCGAGGAT 187762 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||| || ||||||||||| Sbjct 188418 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCAC 188359 Query 60124 TATACTACCGAGGAT 60138 ||||||||||||||| Sbjct 188358 TATACTACCGAGGAT 188344 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||| || ||||||||||| Sbjct 190749 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCAC 190690 Query 60124 TATACTACCGAGGAT 60138 ||||||||||||||| Sbjct 190689 TATACTACCGAGGAT 190675 Score = 84.2 bits (92), Expect = 3e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCC-CGCGTGACAGGCGGACATACTCACCA 60122 |||||| |||| |||||| |||||| ||||||| | ||||||| || |||||||||| Sbjct 190161 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCCGCATGTGACAGACGCGGATACTCACCA 190102 Query 60123 CTATACTACCGAGGAT 60138 |||||||||||||||| Sbjct 190101 CTATACTACCGAGGAT 190086 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| || ||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 190607 AAAACTTCTTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 190548 Query 60118 CACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||| Sbjct 190547 CACCACTATACTACCGAGGAT 190527 Score = 82.4 bits (90), Expect = 9e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||| || ||||||||||| Sbjct 187396 TTCTCCCCGGCCGGGAATTGAACCC-GGTCTCGCATGTGACAGACGCGGATACTCACCAC 187338 Query 60124 TATACTACCGAGGAT 60138 ||||||||||||||| Sbjct 187337 TATACTACCGAGGAT 187323 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| | || |||||| |||||| |||||| | ||||||| || ||||||||||| Sbjct 187981 TTCTCCCCCGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCAC 187922 Query 60124 TATACTACCGAGGAT 60138 ||||||||||||||| Sbjct 187921 TATACTACCGAGGAT 187907 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/77 (84%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGC--GTGACAGGCGGACATACTCACC 60121 |||||| |||| |||||| |||||| |||||| | | ||||||| || ||||||||| Sbjct 188129 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCTCATGTGACAGACGCGGATACTCACC 188070 Query 60122 ACTATACTACCGAGGAT 60138 ||||||||||||||||| Sbjct 188069 ACTATACTACCGAGGAT 188053 >seq2992 Length=68769 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 |||||||| || |||| || | |||||| |||||| |||||| | ||||||| || | Sbjct 5956 ATGAAAAACTT-CTCCCCGCCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 5898 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||||||| Sbjct 5897 TACTCACCACTATACTACCGAGGA 5874 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||| || ||||||||||| Sbjct 11960 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCAC 12019 Query 60124 TATACTACCGAGGA 60137 |||||||||||||| Sbjct 12020 TATACTACCGAGGA 12033 >seq2322 Length=94776 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| || |||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 23818 ATGCAAAACTT-CTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 23876 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||||||| Sbjct 23877 TACTCACCACTATACTACCGAGGA 23900 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||| || ||||||||||| Sbjct 63031 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCAC 63090 Query 60124 TATACTACCGAGGA 60137 |||||||||||||| Sbjct 63091 TATACTACCGAGGA 63104 >seq2301 Length=95489 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| || |||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 8063 ATGCAAAACTT-CTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 8121 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||||||| Sbjct 8122 TACTCACCACTATACTACCGAGGA 8145 >seq1401 Length=151745 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||| || ||||||||||| Sbjct 32016 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCAC 31957 Query 60124 TATACTACCGAGGAT 60138 ||||||||||||||| Sbjct 31956 TATACTACCGAGGAT 31942 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||| || ||||||||||| Sbjct 32743 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCAC 32684 Query 60124 TATACTACCGAGGAT 60138 ||||||||||||||| Sbjct 32683 TATACTACCGAGGAT 32669 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||| || ||||||||||| Sbjct 33180 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCAC 33121 Query 60124 TATACTACCGAGGAT 60138 ||||||||||||||| Sbjct 33120 TATACTACCGAGGAT 33106 Score = 82.4 bits (90), Expect = 9e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||| || ||||||||||| Sbjct 31870 TTCTCC-CGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCAC 31812 Query 60124 TATACTACCGAGGAT 60138 ||||||||||||||| Sbjct 31811 TATACTACCGAGGAT 31797 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| || ||| | ||||||| || ||||||||||| Sbjct 32597 TTCTCCCCGGCCGGGAATTGAACCCGGGCCTCGCATGTGACAGACGCGGATACTCACCAC 32538 Query 60124 TATACTACCGAGGAT 60138 ||||||||||||||| Sbjct 32537 TATACTACCGAGGAT 32523 Score = 82.4 bits (90), Expect = 9e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||| || ||||||||||| Sbjct 33325 TTCTCC-CGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCAC 33267 Query 60124 TATACTACCGAGGAT 60138 ||||||||||||||| Sbjct 33266 TATACTACCGAGGAT 33252 Score = 82.4 bits (90), Expect = 9e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||| || ||||||||||| Sbjct 33470 TTCTCC-CGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCAC 33412 Query 60124 TATACTACCGAGGAT 60138 ||||||||||||||| Sbjct 33411 TATACTACCGAGGAT 33397 >seq1193 Length=173371 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 43043 ACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG 43102 ||| ||||| ||||||||||||||||| | || | || ||||||||| ||| || Sbjct 29170 ACCGGCGAAGATGAGTCGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCTTGGATCTTCGC 29111 Query 43103 TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 43162 || | || | | ||||||| | ||| || || | |||||||| || || || || Sbjct 29110 CTTCACGTTCTCGATCGTGTCGGATGCTTCGACTTCCAATGTGATGGTCTTTCCTGTCAG 29051 Query 43163 CGTCTTTACAAAGATTTGCATT 43184 |||||| |||||||| |||||| Sbjct 29050 CGTCTTCACAAAGATCTGCATT 29029 >seq288 Length=350527 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||| || ||||||||||| Sbjct 247664 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCAC 247723 Query 60124 TATACTACCGAGGAT 60138 ||||||||||||||| Sbjct 247724 TATACTACCGAGGAT 247738 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||| || ||||||||||| Sbjct 253340 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCAC 253399 Query 60124 TATACTACCGAGGAT 60138 ||||||||||||||| Sbjct 253400 TATACTACCGAGGAT 253414 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAA-CCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| |||||| |||| |||||| ||| ||| |||||| | ||||||| || |||| Sbjct 255072 AAAAACTTCTCCCCGGCCGGGAATTGAAACCCGGGTCTCGCATGTGACAGACGCGGATAC 255131 Query 60117 TCACCACTATACTACCGAGGAT 60138 |||||||||||||||||||||| Sbjct 255132 TCACCACTATACTACCGAGGAT 255153 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| ||||| | ||||||| || ||||||||||| Sbjct 255596 TTCTCCCCGGCCGGGAATTGAACCCGAGTCTCGCATGTGACAGACGCGGATACTCACCAC 255655 Query 60124 TATACTACCGAGGAT 60138 ||||||||||||||| Sbjct 255656 TATACTACCGAGGAT 255670 >seq121 Length=466330 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| || |||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 449733 ATGCAAAACTT-CTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 449675 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||||||| Sbjct 449674 TACTCACCACTATACTACCGAGGA 449651 >seq60 Length=575270 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||| | |||||| | ||||||| || |||||||||||| Sbjct 437450 TTCTCCCCGGCCGGGAATAGAACTCGGGTCTCGCATGTGACAGACGCGCATACTCACCAC 437391 Query 60124 TATACTACCGAGGA 60137 |||||||||||||| Sbjct 437390 TATACTACCGAGGA 437377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571648577865160