Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq3 145 7e-30
seq1193 89.7 5e-13
seq2432 82.4 7e-11
seq153 82.4 7e-11
>seq3
Length=1029188
Score = 145 bits (160), Expect = 7e-30
Identities = 183/249 (73%), Gaps = 2/249 (1%)
Strand=Plus/Plus
Query 23441 TCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTG 23500
|| || | ||||||||||||||| || ||||| | ||| ||||| || || | ||||||
Sbjct 36959 TCAAAGATGTCCGCATGCCACGGTTCCAGGTAGATGGCGAACGCTCCTGGACGCTTATTT 37018
Query 23501 CCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCG 23560
||||| || || || || || || ||||||||||| || | |||||||| | ||||||
Sbjct 37019 CCGCCTTGGTCCACATATCGTGCGGTGTTGTTGTAGACACGAAGCATCGGGATAAGACCG 37078
Query 23561 TTGGACGCGCCGCCTACGCCCGCCA-CACTCGAACCTTTTGCTCGAACGTTGTGAACGTG 23619
||||| | |||| ||| || | || | ||||| | || || | ||||| ||||
Sbjct 37079 TTGGAGGTGCCGTTCGTGCCGGCAATCAGT-GAACCAGTAGCGCGGATTTTGTGCACGTT 37137
Query 23620 GAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGAT 23679
| || || || || | ||||| |||| || ||||||||||| |||||||||||
Sbjct 37138 CAGGCCAATTCCACCAGCGCTCTTCGAGATCAGAGCACATTGTTTCAGCGTGTCGTAGAT 37197
Query 23680 GCCCTCGAT 23688
|||| ||||
Sbjct 37198 GCCCGCGAT 37206
Score = 82.4 bits (90), Expect = 7e-11
Identities = 106/144 (74%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 23285 CAGTCGGCCAGGCCGGGCGATTGCATC-GGACACATGAGACTCCACATTGAGTCATTTTC 23343
||||| | || |||||||| | ||| || ||||| || ||| | |||| ||
Sbjct 36741 CAGTCATCGAGACCGGGCGACT-CATGAGGGCACATCAGCGACCATTCTTCGTCACGCTC 36799
Query 23344 AACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCAC 23403
||| | | |||| || ||||| || ||||| |||||||||||||| ||||| || ||| |
Sbjct 36800 AACCCTTTTCATGAACAGATCAGGAATCCACAGAGCGTAGAACAGGTCGCGAGCTCGCTC 36859
Query 23404 CTCCTCTTTGCCGGTGTTCTTTTT 23427
||||| |||||||||||| ||
Sbjct 36860 TTCCTCGGGGCCGGTGTTCTTCTT 36883
>seq1193
Length=173371
Score = 89.7 bits (98), Expect = 5e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
||||||||| ||||| |||||| |||| || || || ||||| | || || ||| | ||
Sbjct 32190 CATGCAAATCTTCGTGAAGACTTTGACTGGGAAGACCATCACATTGGAAGTAGAAGCCTC 32249
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||| | |||| | |||||| || || |||||||||||| | || || |||||
Sbjct 32250 CGATACGATCGAGAATGTCAAAGCGAAGATCCAGGACAAGGAAGGTATTCCTCCAGACCA 32309
Query 31312 GCAGCGTCTAATATTCGCTGGCAA 31335
|||||| || || ||||| || ||
Sbjct 32310 GCAGCGACTCATCTTCGCAGGTAA 32333
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| |||||| |||| || || ||||||||| | || ||||| | |||
Sbjct 30226 ATGCAAATCTTCGTGAAGACTTTGACTGGAAAGACGATCACCCTAGAGGTTGAGGCCTCC 30285
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || || || || |||||||||||| | || || ||||||
Sbjct 30286 GACACGATCGAGAATGTAAAGGCGAAGATCCAAGACAAGGAAGGCATTCCACCAGACCAG 30345
Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335
|| || || || ||||| || ||
Sbjct 30346 CAACGACTCATCTTCGCCGGTAA 30368
Score = 82.4 bits (90), Expect = 7e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| ||||| |||||||| || || |||||| | || ||||| | ||
Sbjct 31227 ATGCAAATCTTCGTGAAGACACTGACAGGGAAGACCATCACCTTAGAGGTTGAGGCCTCT 31286
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || || || || |||||||||||| | || || ||||||
Sbjct 31287 GACACAATCGAGAACGTGAAGGCGAAGATCCAAGACAAGGAAGGCATTCCACCAGACCAG 31346
Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335
|| || || || ||||| || ||
Sbjct 31347 CAACGACTCATCTTCGCCGGTAA 31369
Score = 82.4 bits (90), Expect = 7e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| ||||| |||| || || || |||||| | || |||||| | ||
Sbjct 31527 ATGCAAATTTTCGTGAAGACCTTGACCGGAAAGACCATCACCTTAGAGGTTGAAGCATCT 31586
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || || || || |||||||||||| | || || ||||||
Sbjct 31587 GACACGATCGAGAATGTAAAGGCGAAGATCCAAGACAAGGAAGGCATTCCACCAGACCAG 31646
Query 31313 CAGCGTCTAATATTCGCTGG 31332
|| || || || ||||| ||
Sbjct 31647 CAACGACTCATCTTCGCCGG 31666
>seq2432
Length=89687
Score = 82.4 bits (90), Expect = 7e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| || || || ||||| || || || ||| |||| || || |||||
Sbjct 8533 ATGCAAATCTTCGTTAAAACGCTAACAGGGAAGACAATTACCCTCGAGGTGGAGGCGTCC 8474
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | |||||| | || ||||||||||| | || || ||||||
Sbjct 8473 GACACAATCGAGAATGTCAAAGCCAAGATTCAAGACAAGGAAGGAATCCCTCCAGACCAG 8414
Query 31313 CAGCGTCTAATATTCGCTGG 31332
||||| || || ||||| ||
Sbjct 8413 CAGCGACTGATCTTCGCAGG 8394
>seq153
Length=425603
Score = 82.4 bits (90), Expect = 7e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| |||| || || |||| |||| | || ||| || | ||
Sbjct 198092 ATGCAGATCTTCGTGAAGACGTTGACCGGAAAGACGACCACCCTAGAGGTTCAAGCATCT 198033
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | |||| | || || || || |||||||||||| | || || ||||||
Sbjct 198032 GAGACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCACCAGACCAG 197973
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| ||||| || || || | ||||||| | || || ||| | || ||||||
Sbjct 197972 CAACGTCTCATCTTTGCCGACAAACAGCTCGAGGATGGACACACTCTTTCAGACTATAAC 197913
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
|| || ||||| || | || |||||||| |||
Sbjct 197912 ATCCAGAAAGAGTCCATACTGCATCTGGTGCTT 197880
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445634637024240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |