Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3 145 7e-30 seq1193 89.7 5e-13 seq2432 82.4 7e-11 seq153 82.4 7e-11 >seq3 Length=1029188 Score = 145 bits (160), Expect = 7e-30 Identities = 183/249 (73%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 23441 TCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTG 23500 || || | ||||||||||||||| || ||||| | ||| ||||| || || | |||||| Sbjct 36959 TCAAAGATGTCCGCATGCCACGGTTCCAGGTAGATGGCGAACGCTCCTGGACGCTTATTT 37018 Query 23501 CCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCG 23560 ||||| || || || || || || ||||||||||| || | |||||||| | |||||| Sbjct 37019 CCGCCTTGGTCCACATATCGTGCGGTGTTGTTGTAGACACGAAGCATCGGGATAAGACCG 37078 Query 23561 TTGGACGCGCCGCCTACGCCCGCCA-CACTCGAACCTTTTGCTCGAACGTTGTGAACGTG 23619 ||||| | |||| ||| || | || | ||||| | || || | ||||| |||| Sbjct 37079 TTGGAGGTGCCGTTCGTGCCGGCAATCAGT-GAACCAGTAGCGCGGATTTTGTGCACGTT 37137 Query 23620 GAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGAT 23679 | || || || || | ||||| |||| || ||||||||||| ||||||||||| Sbjct 37138 CAGGCCAATTCCACCAGCGCTCTTCGAGATCAGAGCACATTGTTTCAGCGTGTCGTAGAT 37197 Query 23680 GCCCTCGAT 23688 |||| |||| Sbjct 37198 GCCCGCGAT 37206 Score = 82.4 bits (90), Expect = 7e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 23285 CAGTCGGCCAGGCCGGGCGATTGCATC-GGACACATGAGACTCCACATTGAGTCATTTTC 23343 ||||| | || |||||||| | ||| || ||||| || ||| | |||| || Sbjct 36741 CAGTCATCGAGACCGGGCGACT-CATGAGGGCACATCAGCGACCATTCTTCGTCACGCTC 36799 Query 23344 AACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCAC 23403 ||| | | |||| || ||||| || ||||| |||||||||||||| ||||| || ||| | Sbjct 36800 AACCCTTTTCATGAACAGATCAGGAATCCACAGAGCGTAGAACAGGTCGCGAGCTCGCTC 36859 Query 23404 CTCCTCTTTGCCGGTGTTCTTTTT 23427 ||||| |||||||||||| || Sbjct 36860 TTCCTCGGGGCCGGTGTTCTTCTT 36883 >seq1193 Length=173371 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| |||||| |||| || || || ||||| | || || ||| | || Sbjct 32190 CATGCAAATCTTCGTGAAGACTTTGACTGGGAAGACCATCACATTGGAAGTAGAAGCCTC 32249 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | |||| | |||||| || || |||||||||||| | || || ||||| Sbjct 32250 CGATACGATCGAGAATGTCAAAGCGAAGATCCAGGACAAGGAAGGTATTCCTCCAGACCA 32309 Query 31312 GCAGCGTCTAATATTCGCTGGCAA 31335 |||||| || || ||||| || || Sbjct 32310 GCAGCGACTCATCTTCGCAGGTAA 32333 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||| |||| || || ||||||||| | || ||||| | ||| Sbjct 30226 ATGCAAATCTTCGTGAAGACTTTGACTGGAAAGACGATCACCCTAGAGGTTGAGGCCTCC 30285 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || |||||||||||| | || || |||||| Sbjct 30286 GACACGATCGAGAATGTAAAGGCGAAGATCCAAGACAAGGAAGGCATTCCACCAGACCAG 30345 Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335 || || || || ||||| || || Sbjct 30346 CAACGACTCATCTTCGCCGGTAA 30368 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| |||||||| || || |||||| | || ||||| | || Sbjct 31227 ATGCAAATCTTCGTGAAGACACTGACAGGGAAGACCATCACCTTAGAGGTTGAGGCCTCT 31286 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || |||||||||||| | || || |||||| Sbjct 31287 GACACAATCGAGAACGTGAAGGCGAAGATCCAAGACAAGGAAGGCATTCCACCAGACCAG 31346 Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335 || || || || ||||| || || Sbjct 31347 CAACGACTCATCTTCGCCGGTAA 31369 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| |||| || || || |||||| | || |||||| | || Sbjct 31527 ATGCAAATTTTCGTGAAGACCTTGACCGGAAAGACCATCACCTTAGAGGTTGAAGCATCT 31586 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || |||||||||||| | || || |||||| Sbjct 31587 GACACGATCGAGAATGTAAAGGCGAAGATCCAAGACAAGGAAGGCATTCCACCAGACCAG 31646 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || || || || ||||| || Sbjct 31647 CAACGACTCATCTTCGCCGG 31666 >seq2432 Length=89687 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || || || ||||| || || || ||| |||| || || ||||| Sbjct 8533 ATGCAAATCTTCGTTAAAACGCTAACAGGGAAGACAATTACCCTCGAGGTGGAGGCGTCC 8474 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | || ||||||||||| | || || |||||| Sbjct 8473 GACACAATCGAGAATGTCAAAGCCAAGATTCAAGACAAGGAAGGAATCCCTCCAGACCAG 8414 Query 31313 CAGCGTCTAATATTCGCTGG 31332 ||||| || || ||||| || Sbjct 8413 CAGCGACTGATCTTCGCAGG 8394 >seq153 Length=425603 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || || |||| |||| | || ||| || | || Sbjct 198092 ATGCAGATCTTCGTGAAGACGTTGACCGGAAAGACGACCACCCTAGAGGTTCAAGCATCT 198033 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || || || |||||||||||| | || || |||||| Sbjct 198032 GAGACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCACCAGACCAG 197973 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || || | ||||||| | || || ||| | || |||||| Sbjct 197972 CAACGTCTCATCTTTGCCGACAAACAGCTCGAGGATGGACACACTCTTTCAGACTATAAC 197913 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || ||||| || | || |||||||| ||| Sbjct 197912 ATCCAGAAAGAGTCCATACTGCATCTGGTGCTT 197880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445634637024240