Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq1193 109 5e-19
>seq1193
Length=173371
Score = 109 bits (120), Expect = 5e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681
||||||||| | ||||||||||||||||| ||||| |||||||||||||| ||| ||
Sbjct 29467 TTACCAGCAAAAATCAGACGTTGCTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTTC 29408
Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741
|| | | || | ||||| | || |||||||||| || | |||||||||||||
Sbjct 29407 GCCTTCACATTCTCAATCGTGTCAGAGGCTTCCACCTCAAGTGTGATCGTCTTGCCGGTC 29348
Query 139742 AACGTTTTTACGAATATTTGCAT 139764
| || || ||||| ||||||||
Sbjct 29347 AGTGTCTTCACGAAGATTTGCAT 29325
Score = 89.7 bits (98), Expect = 5e-13
Identities = 114/154 (74%), Gaps = 6/154 (4%)
Strand=Plus/Minus
Query 139616 AGCTGTT----TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671
||||||| |||| ||| | || ||||| || ||||| ||||| |||||||| |||||
Sbjct 29775 AGCTGTTACCGTACCGGCAAAAATGAGACGCTGTTGATCTGGAGGGATGCCTTCCTTGTC 29716
Query 139672 GGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730
||| | || | || | | || | ||||| | || ||| ||||| | || | ||
Sbjct 29715 C-TGAATCTTCGCCTTCACGTTCTCGATCGTGTCAGAGGCCTCAACCTCGAGTGTGATCG 29657
Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||| |||||||||||||| ||||| ||||||||
Sbjct 29656 TCTTTCCGGTCAACGTTTTCACGAAGATTTGCAT 29623
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495917369682400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |