Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1193 109 5e-19 >seq1193 Length=173371 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||||||| | ||||||||||||||||| ||||| |||||||||||||| ||| || Sbjct 29467 TTACCAGCAAAAATCAGACGTTGCTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTTC 29408 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | ||||| | || |||||||||| || | ||||||||||||| Sbjct 29407 GCCTTCACATTCTCAATCGTGTCAGAGGCTTCCACCTCAAGTGTGATCGTCTTGCCGGTC 29348 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | || || ||||| |||||||| Sbjct 29347 AGTGTCTTCACGAAGATTTGCAT 29325 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/154 (74%), Gaps = 6/154 (4%) Strand=Plus/Minus Query 139616 AGCTGTT----TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||||||| |||| ||| | || ||||| || ||||| ||||| |||||||| ||||| Sbjct 29775 AGCTGTTACCGTACCGGCAAAAATGAGACGCTGTTGATCTGGAGGGATGCCTTCCTTGTC 29716 Query 139672 GGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| | || | || | | || | ||||| | || ||| ||||| | || | || Sbjct 29715 C-TGAATCTTCGCCTTCACGTTCTCGATCGTGTCAGAGGCCTCAACCTCGAGTGTGATCG 29657 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| |||||||||||||| ||||| |||||||| Sbjct 29656 TCTTTCCGGTCAACGTTTTCACGAAGATTTGCAT 29623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495917369682400