Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2432 98.7 2e-15 seq1193 98.7 2e-15 seq12137 96.9 8e-15 >seq2432 Length=89687 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || || ||||| | | ||| ||||||||||| || || ||||| || || ||||| Sbjct 6321 TTACCGGCGAAAATCAAACGCTGCTGATCAGGAGGAATCCCCTCTTTGTCTTGGATCTTG 6380 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || ||||| || | ||| || | ||| ||||| || || || ||||| ||||| Sbjct 6381 GCCTTGACATTCTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTCCCAGTG 6440 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || || ||||| |||||||||||| Sbjct 6441 AGCGTCTTTACGAATATCTGCATT 6464 Score = 86.0 bits (94), Expect = 1e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 |||| || || || ||||| || | | ||| ||||| ||||| ||||| || || || Sbjct 8072 TCTACATGCTTACCCGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCCTCCTTGTCT 8131 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||||||||| || || ||||| | ||| || | || || || || || || ||| Sbjct 8132 TGAATCTTTGCCTTGACGTTTTCGATGGTGTCTGAGGCCTCGACTTCCAGGGTGATTGTC 8191 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || |||||||| Sbjct 8192 TTTCCAGTGAGCGTCTTAACGAAGATCTGCAT 8223 >seq1193 Length=173371 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| || | || ||||| ||||| || |||||||| ||||| ||||| Sbjct 29467 TTACCAGCAAAAATCAGACGTTGCTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTTC 29408 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || ||||| || | || || | ||| ||||| ||||| || ||||| || || Sbjct 29407 GCCTTCACATTCTCAATCGTGTCAGAGGCTTCCACCTCAAGTGTGATCGTCTTGCCGGTC 29348 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 ||||| || || || || |||||| Sbjct 29347 AGTGTCTTCACGAAGATTTGCATT 29324 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| || | ||||||||| ||||| || ||||| || ||||||||||| || Sbjct 29762 CCGGCAAAAATGAGACGCTGTTGATCTGGAGGGATGCCTTCCTTGTCCTGAATCTTCGCC 29703 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || || || | || || | || ||||| ||||| || ||||| || || | Sbjct 29702 TTCACGTTCTCGATCGTGTCAGAGGCCTCAACCTCGAGTGTGATCGTCTTTCCGGTCAAC 29643 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| Sbjct 29642 GTTTTCACGAAGATTTGCAT 29623 >seq12137 Length=1209 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || ||||| || | | ||||||||| || || || ||||| || || || ||||| || Sbjct 691 CCGGCAAAGATCAATCGCTGTTGATCTGGGGGAATCCCTTCCTTGTCTTGGATCTTGGCC 750 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || || || | |||||| || ||| ||||| | || || ||||| |||||||| Sbjct 751 TTGACGTTCTCGATTGTATCGGAAGCTTCGACCTCCAAGGTGATTGTCTTTCCAGTAAGA 810 Query 104540 GTTTTTACAAATATCTGCATT 104560 || ||||| |||||||||||| Sbjct 811 GTCTTTACGAATATCTGCATT 831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151049552551076