Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq2432 98.7 2e-15
seq1193 98.7 2e-15
seq12137 96.9 8e-15
>seq2432
Length=89687
Score = 98.7 bits (108), Expect = 2e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| || || ||||| | | ||| ||||||||||| || || ||||| || || |||||
Sbjct 6321 TTACCGGCGAAAATCAAACGCTGCTGATCAGGAGGAATCCCCTCTTTGTCTTGGATCTTG 6380
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
|| || ||||| || | ||| || | ||| ||||| || || || ||||| |||||
Sbjct 6381 GCCTTGACATTCTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTCCCAGTG 6440
Query 104537 AGTGTTTTTACAAATATCTGCATT 104560
|| || ||||| ||||||||||||
Sbjct 6441 AGCGTCTTTACGAATATCTGCATT 6464
Score = 86.0 bits (94), Expect = 1e-11
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|||| || || || ||||| || | | ||| ||||| ||||| ||||| || || ||
Sbjct 8072 TCTACATGCTTACCCGCAAAGATCAATCGCTGCTGATCTGGAGGAATTCCCTCCTTGTCT 8131
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
||||||||||| || || ||||| | ||| || | || || || || || || |||
Sbjct 8132 TGAATCTTTGCCTTGACGTTTTCGATGGTGTCTGAGGCCTCGACTTCCAGGGTGATTGTC 8191
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| || || || || || ||||||||
Sbjct 8192 TTTCCAGTGAGCGTCTTAACGAAGATCTGCAT 8223
>seq1193
Length=173371
Score = 98.7 bits (108), Expect = 2e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| ||||||||||| || | || ||||| ||||| || |||||||| ||||| |||||
Sbjct 29467 TTACCAGCAAAAATCAGACGTTGCTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTTC 29408
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
|| || ||||| || | || || | ||| ||||| ||||| || ||||| || ||
Sbjct 29407 GCCTTCACATTCTCAATCGTGTCAGAGGCTTCCACCTCAAGTGTGATCGTCTTGCCGGTC 29348
Query 104537 AGTGTTTTTACAAATATCTGCATT 104560
||||| || || || || ||||||
Sbjct 29347 AGTGTCTTCACGAAGATTTGCATT 29324
Score = 86.0 bits (94), Expect = 1e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|| |||||||| || | ||||||||| ||||| || ||||| || ||||||||||| ||
Sbjct 29762 CCGGCAAAAATGAGACGCTGTTGATCTGGAGGGATGCCTTCCTTGTCCTGAATCTTCGCC 29703
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| || || || | || || | || ||||| ||||| || ||||| || || |
Sbjct 29702 TTCACGTTCTCGATCGTGTCAGAGGCCTCAACCTCGAGTGTGATCGTCTTTCCGGTCAAC 29643
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||| || || || |||||
Sbjct 29642 GTTTTCACGAAGATTTGCAT 29623
>seq12137
Length=1209
Score = 96.9 bits (106), Expect = 8e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|| ||||| || | | ||||||||| || || || ||||| || || || ||||| ||
Sbjct 691 CCGGCAAAGATCAATCGCTGTTGATCTGGGGGAATCCCTTCCTTGTCTTGGATCTTGGCC 750
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| || || || | |||||| || ||| ||||| | || || ||||| ||||||||
Sbjct 751 TTGACGTTCTCGATTGTATCGGAAGCTTCGACCTCCAAGGTGATTGTCTTTCCAGTAAGA 810
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| ||||| ||||||||||||
Sbjct 811 GTCTTTACGAATATCTGCATT 831
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151049552551076
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |