Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq1973 105 6e-18 >seq1973 Length=111955 Score = 105 bits (116), Expect = 6e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 5621 ACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCG 5680 ||||| || || | | ||||||||||| |||| ||| || | || ||||||||| Sbjct 23693 ACCTCAAAGTCAGTCGGTCCGAAGTTGAAGAGCAGCACTTTCAGCTCTCCTCGGTAGTCG 23634 Query 5681 GCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGA 5740 || | ||| || || || ||||||||||| | |||| ||||||| ||||| |||||| Sbjct 23633 CTATCCACCACACCAGCACCGACGTCGATGAAATTCTTGGCCGCCAGACCGGAACGGGGA 23574 Query 5741 GCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAG 5781 ||||| ||||| ||| | ||| ||||||| | |||||| Sbjct 23573 GCCACTCGGCCATAGTAGCCAAACGGAAGCTCGACCTGCAG 23533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429930459262664