Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq2432 109 5e-19
seq12137 105 6e-18
seq1193 87.8 2e-12
seq153 86.0 6e-12
>seq2432
Length=89687
Score = 109 bits (120), Expect = 5e-19
Identities = 107/138 (78%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931
||||||| |||| ||||||||||||||||| || || ||||| | ||| ||||||||||
Sbjct 8088 CAAAGATCAATCGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGAATCTTTGCCTTGA 8147
Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991
|| ||| ||||| | | ||||| || | ||||| || |||||||| || || |
Sbjct 8148 CGTTTTCGATGGTGTCTGAGGCCTCGACTTCCAGGGTGATTGTCTTTCCAGTGAGCGTCT 8207
Query 94992 TCACAAAGATCTGCATGC 95009
| || |||||||||||||
Sbjct 8208 TAACGAAGATCTGCATGC 8225
>seq12137
Length=1209
Score = 105 bits (116), Expect = 6e-18
Identities = 106/138 (77%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931
||||||| | || |||||||||||||||||| || || ||||| | |||||| ||||| |
Sbjct 1003 CAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGAATTTTGGCCTTCA 1062
Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991
| ||| ||||| | | ||||| || | |||||||| |||||||| || || |
Sbjct 1063 CATTCTCGATGGTGTCTGAGGCCTCGACTTCCAGAGTGATGGTCTTTCCAGTGAGCGTCT 1122
Query 94992 TCACAAAGATCTGCATGC 95009
| || |||||||||||||
Sbjct 1123 TAACGAAGATCTGCATGC 1140
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927
||| ||||||| |||| || |||||||| ||||| ||||| ||||| | || || |||
Sbjct 691 CCGGCAAAGATCAATCGCTGTTGATCTGGGGGAATCCCTTCCTTGTCTTGGATCTTGGCC 750
Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987
|||||| ||| || || | ||||| || | ||||| || ||||||||||||
Sbjct 751 TTGACGTTCTCGATTGTATCGGAAGCTTCGACCTCCAAGGTGATTGTCTTTCCAGTAAGA 810
Query 94988 GTTTTCACAAAGATCTGCAT 95007
|| || || || ||||||||
Sbjct 811 GTCTTTACGAATATCTGCAT 830
>seq1193
Length=173371
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931
||||||| | ||||||||||||||| || || ||||| ||||| | || || ||||| |
Sbjct 31059 CAAAGATGAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCCTTCA 31000
Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991
|| ||| ||||||| | || || || | |||||||| || || || || || |
Sbjct 30999 CGTTCTCGATTGTGTCAGAGGCCTCAACCTCTAAGGTGATGGTCTTCCCTGTCAGTGTCT 30940
Query 94992 TCACAAAGATCTGCAT 95007
|||| ||||| |||||
Sbjct 30939 TCACGAAGATTTGCAT 30924
Score = 86.0 bits (94), Expect = 6e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924
|| ||| | ||||| | ||||||||||||||||||||| ||||| ||||| | || ||
Sbjct 30064 TTACCGGCGAAGATAAGTCTTTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGGATCTTC 30005
Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984
||||| || ||| || || | | || || || | |||||||| || |||||
Sbjct 30004 GCCTTTACATTCTCGATCGTATCGGAGGCTTCTACTTCCAATGTGATGGTCTTCCCAGTC 29945
Query 94985 AGAGTTTTCACAAAGATCTGCATGC 95009
| || ||||| ||||| |||||||
Sbjct 29944 AAGGTCTTCACGAAGATTTGCATGC 29920
Score = 82.4 bits (90), Expect = 7e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927
||| | ||||| | || ||||| |||||||| || || || ||||| | || || |||
Sbjct 29169 CCGGCGAAGATGAGTCGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCTTGGATCTTCGCC 29110
Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987
|| ||| ||| ||||| | ||||| || | |||||||| ||||| || ||
Sbjct 29109 TTCACGTTCTCGATCGTGTCGGATGCTTCGACTTCCAATGTGATGGTCTTTCCTGTCAGC 29050
Query 94988 GTTTTCACAAAGATCTGCAT 95007
|| |||||||||||||||||
Sbjct 29049 GTCTTCACAAAGATCTGCAT 29030
>seq153
Length=425603
Score = 86.0 bits (94), Expect = 6e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||| |||| | || || || || | |||||| || | ||||| ||||||
Sbjct 197883 CACCAGATGCAGTATGGACTCTTTCTGGATGTTATAGTCTGAAAGAGTGTGTCCATCCTC 197942
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|||||||| || ||||||| | | |||||| ||||| ||||| ||||| ||||| |
Sbjct 197943 GAGCTGTTTGTCGGCAAAGATGAGACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTG 198002
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA-CGTCAATCGTGATGGTTT 94976
|| || ||||| ||| ||| || |||| || | || | || | ||| | || |
Sbjct 198003 GATCTTCGCCTTCACGTTCTCGATCGTCTCAGA-TGCTTGAACCTCTAGGGTGGTCGTCT 198061
Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||| || | || ||||| |||||||||||
Sbjct 198062 TTCCGGTCAACGTCTTCACGAAGATCTGCAT 198092
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448158690724920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |