Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2432 109 5e-19 seq12137 105 6e-18 seq1193 87.8 2e-12 seq153 86.0 6e-12 >seq2432 Length=89687 Score = 109 bits (120), Expect = 5e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| |||| ||||||||||||||||| || || ||||| | ||| |||||||||| Sbjct 8088 CAAAGATCAATCGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGAATCTTTGCCTTGA 8147 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 || ||| ||||| | | ||||| || | ||||| || |||||||| || || | Sbjct 8148 CGTTTTCGATGGTGTCTGAGGCCTCGACTTCCAGGGTGATTGTCTTTCCAGTGAGCGTCT 8207 Query 94992 TCACAAAGATCTGCATGC 95009 | || ||||||||||||| Sbjct 8208 TAACGAAGATCTGCATGC 8225 >seq12137 Length=1209 Score = 105 bits (116), Expect = 6e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| | || |||||||||||||||||| || || ||||| | |||||| ||||| | Sbjct 1003 CAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGAATTTTGGCCTTCA 1062 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | ||| ||||| | | ||||| || | |||||||| |||||||| || || | Sbjct 1063 CATTCTCGATGGTGTCTGAGGCCTCGACTTCCAGAGTGATGGTCTTTCCAGTGAGCGTCT 1122 Query 94992 TCACAAAGATCTGCATGC 95009 | || ||||||||||||| Sbjct 1123 TAACGAAGATCTGCATGC 1140 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 ||| ||||||| |||| || |||||||| ||||| ||||| ||||| | || || ||| Sbjct 691 CCGGCAAAGATCAATCGCTGTTGATCTGGGGGAATCCCTTCCTTGTCTTGGATCTTGGCC 750 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 |||||| ||| || || | ||||| || | ||||| || |||||||||||| Sbjct 751 TTGACGTTCTCGATTGTATCGGAAGCTTCGACCTCCAAGGTGATTGTCTTTCCAGTAAGA 810 Query 94988 GTTTTCACAAAGATCTGCAT 95007 || || || || |||||||| Sbjct 811 GTCTTTACGAATATCTGCAT 830 >seq1193 Length=173371 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| | ||||||||||||||| || || ||||| ||||| | || || ||||| | Sbjct 31059 CAAAGATGAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCCTTCA 31000 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 || ||| ||||||| | || || || | |||||||| || || || || || | Sbjct 30999 CGTTCTCGATTGTGTCAGAGGCCTCAACCTCTAAGGTGATGGTCTTCCCTGTCAGTGTCT 30940 Query 94992 TCACAAAGATCTGCAT 95007 |||| ||||| ||||| Sbjct 30939 TCACGAAGATTTGCAT 30924 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| | ||||| | ||||||||||||||||||||| ||||| ||||| | || || Sbjct 30064 TTACCGGCGAAGATAAGTCTTTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGGATCTTC 30005 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||| || ||| || || | | || || || | |||||||| || ||||| Sbjct 30004 GCCTTTACATTCTCGATCGTATCGGAGGCTTCTACTTCCAATGTGATGGTCTTCCCAGTC 29945 Query 94985 AGAGTTTTCACAAAGATCTGCATGC 95009 | || ||||| ||||| ||||||| Sbjct 29944 AAGGTCTTCACGAAGATTTGCATGC 29920 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 ||| | ||||| | || ||||| |||||||| || || || ||||| | || || ||| Sbjct 29169 CCGGCGAAGATGAGTCGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCTTGGATCTTCGCC 29110 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 || ||| ||| ||||| | ||||| || | |||||||| ||||| || || Sbjct 29109 TTCACGTTCTCGATCGTGTCGGATGCTTCGACTTCCAATGTGATGGTCTTTCCTGTCAGC 29050 Query 94988 GTTTTCACAAAGATCTGCAT 95007 || ||||||||||||||||| Sbjct 29049 GTCTTCACAAAGATCTGCAT 29030 >seq153 Length=425603 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| |||| | || || || || | |||||| || | ||||| |||||| Sbjct 197883 CACCAGATGCAGTATGGACTCTTTCTGGATGTTATAGTCTGAAAGAGTGTGTCCATCCTC 197942 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||||| || ||||||| | | |||||| ||||| ||||| ||||| ||||| | Sbjct 197943 GAGCTGTTTGTCGGCAAAGATGAGACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTG 198002 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA-CGTCAATCGTGATGGTTT 94976 || || ||||| ||| ||| || |||| || | || | || | ||| | || | Sbjct 198003 GATCTTCGCCTTCACGTTCTCGATCGTCTCAGA-TGCTTGAACCTCTAGGGTGGTCGTCT 198061 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || | || ||||| ||||||||||| Sbjct 198062 TTCCGGTCAACGTCTTCACGAAGATCTGCAT 198092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448158690724920