Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq395 159 5e-35 seq4254 145 1e-30 seq410 132 8e-27 seq163 116 6e-22 seq4710 89.7 8e-14 seq5435 84.2 3e-12 >seq395 Length=310897 Score = 159 bits (176), Expect = 5e-35 Identities = 192/261 (74%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || || ||||||| || || || |||||||| || |||||||||||||| || Sbjct 14802 CGCCAAACGCCATCGCAAGGTGCTGCGTGACAACATCCAGGGCATCACCAAGCCAGCCAT 14861 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || || ||||||||||| ||||| || || | |||| || |||| Sbjct 14862 CCGTCGTCTCGCCCGCCGTGGTGGAGTGAAGCGCATCAGCGGTCTCATCTACGAGGAGAC 14921 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| ||| |||| |||||| || ||| ||| Sbjct 14922 CCGCGGTGTCCTCAAGGTGTTCCTTGAGAACGTGATCCGTGATGCGGTCACCTACTGCGA 14981 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| ||||||| || |||| || ||||| Sbjct 14982 GCACGCCAAGAGAAAGACCGTCACCGCCATGGATGTCGTCTACGCTCTGAAGCGCCAAGG 15041 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 |||| | || ||||| || Sbjct 15042 ACGTACCCTGTACGGTTTCGG 15062 >seq4254 Length=35462 Score = 145 bits (160), Expect = 1e-30 Identities = 178/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| | || || || || ||||| || ||||||||||| || || Sbjct 28291 CGCGAAGCGCCATCGCAAAGTGCTCCGCGACAATATCCAGGGCATCACCAAGCCGGCCAT 28350 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| |||||||| || || |||||| | ||||| | |||| ||||||| Sbjct 28351 CCGTCGTCTGGCCCGTCGTGGCGGCGTGAAGCGTATTTCTGGTCTCATCTACGAAGAGAC 28410 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || |||| | |||||| ||| ||| |||| || || || ||| ||| Sbjct 28411 ACGCGGCGTGCTGAAAGTATTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACTGCGA 28470 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || || ||||| |||||| | ||||| ||||||| || | || || || || Sbjct 28471 ACACGCGAAGCGGAAGACCGTCACCGCGATGGACGTCGTCTACGCCCTCAAGCGCCAGGG 28530 Query 16672 CCG 16674 || Sbjct 28531 ACG 28533 >seq410 Length=307304 Score = 132 bits (146), Expect = 8e-27 Identities = 168/226 (74%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| ||||| || |||||||| || ||||||||||| || || Sbjct 307077 CGCCAAGCGCCATCGCAAGGTGCTTCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 307136 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || || ||||||||||| ||||| || || | |||| || |||| Sbjct 307137 CCGTCGTCTCGCCCGCCGTGGTGGAGTGAAGCGCATCAGCGGTCTCATCTACGAGGAGAC 307196 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCA-CTA-TAC- 16608 || | ||| | ||| | ||||| ||| ||| |||| |||||| |||| ||| | | Sbjct 307197 CCGCGGTGTCCTCAAGGTGTTCCTTGAGAACGTGATCCGTGATGCGGTCCACCTACTGCG 307256 Query 16609 CGAGCACGCTAAACGTAAGACTGTCACCTCCATGG-ATATCGTCTA 16653 |||||||| || | ||||| |||||| |||||| | ||||||| Sbjct 307257 AGAGCACGCCAAGAGAAAGACCGTCACCGCCATGGAACGTCGTCTA 307302 >seq163 Length=418455 Score = 116 bits (128), Expect = 6e-22 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 16436 AAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCG 16494 ||||| |||||| | | | | || || |||||| || ||||||||||| || ||||| Sbjct 70763 AAGCGATATCGCATGGTGT-TGCGCGACAACATCTCCGGCATCACCAAGCCGGCGATCCG 70821 Query 16495 TCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCG 16554 |||||| || ||||| | |||||| |||| | ||||| | |||||||| ||| |||| Sbjct 70822 TCGTCTTGCCCGTCGAGCTGGAGTGGTGCGTATTTCTGGGCTCGTCTATGAGGAGGTTCG 70881 Query 16555 TGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCA 16614 | || | | | ||||||| || ||| || | || ||| ||| || ||| || Sbjct 70882 AGGCGTCCTCAGGGTCTTCCTGGAGGACGTAATTCGTGGAGCTGTCCTGTACTGCGAACA 70941 Query 16615 CGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACG 16665 || || || | || |||||| | ||||| ||||||||||| ||||| || Sbjct 70942 TGCGAAGCGAACCACCGTCACCGCGATGGACATCGTCTATGCGTTGAAGCG 70992 >seq4710 Length=27489 Score = 89.7 bits (98), Expect = 8e-14 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| ||||| || |||||||| ||||||| || ||||| ||| Sbjct 1286 GCCAAGCGCCATCGCAAGGTGCTTCGTGACAACATCCAGGGAATCATCATTCCAGCCATC 1345 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCG 16524 |||||||| || |||||||||||||| ||||| Sbjct 1346 CGTCGTCTCGCCCGTCGTGGTGGAGTGAAGCG 1377 >seq5435 Length=18483 Score = 84.2 bits (92), Expect = 3e-12 Identities = 75/93 (81%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || || ||||||| ||||| || |||||||| |||||| ||||||||| || Sbjct 8752 CGCCAAACGCCATCGCAAGGTGCTTCGTGACAACATCCAGGGAATC--CAAGCCAGCCAT 8695 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCG 16524 ||||||||| || || ||||||||||| ||||| Sbjct 8694 CCGTCGTCTTGCACGCCGTGGTGGAGTGAAGCG 8662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79053579382371