Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq395 159 5e-35
seq4254 145 1e-30
seq410 132 8e-27
seq163 116 6e-22
seq4710 89.7 8e-14
seq5435 84.2 3e-12
>seq395
Length=310897
Score = 159 bits (176), Expect = 5e-35
Identities = 192/261 (74%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| || || ||||||| || || || |||||||| || |||||||||||||| ||
Sbjct 14802 CGCCAAACGCCATCGCAAGGTGCTGCGTGACAACATCCAGGGCATCACCAAGCCAGCCAT 14861
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||||||||| || || ||||||||||| ||||| || || | |||| || ||||
Sbjct 14862 CCGTCGTCTCGCCCGCCGTGGTGGAGTGAAGCGCATCAGCGGTCTCATCTACGAGGAGAC 14921
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| | ||| | ||||| ||| ||| |||| |||||| || ||| |||
Sbjct 14922 CCGCGGTGTCCTCAAGGTGTTCCTTGAGAACGTGATCCGTGATGCGGTCACCTACTGCGA 14981
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| |||||| |||||||| ||||||| || |||| || |||||
Sbjct 14982 GCACGCCAAGAGAAAGACCGTCACCGCCATGGATGTCGTCTACGCTCTGAAGCGCCAAGG 15041
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
|||| | || ||||| ||
Sbjct 15042 ACGTACCCTGTACGGTTTCGG 15062
>seq4254
Length=35462
Score = 145 bits (160), Expect = 1e-30
Identities = 178/243 (73%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| ||||||| | || || || || ||||| || ||||||||||| || ||
Sbjct 28291 CGCGAAGCGCCATCGCAAAGTGCTCCGCGACAATATCCAGGGCATCACCAAGCCGGCCAT 28350
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|||||||||||| |||||||| || || |||||| | ||||| | |||| |||||||
Sbjct 28351 CCGTCGTCTGGCCCGTCGTGGCGGCGTGAAGCGTATTTCTGGTCTCATCTACGAAGAGAC 28410
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || |||| | |||||| ||| ||| |||| || || || ||| |||
Sbjct 28411 ACGCGGCGTGCTGAAAGTATTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACTGCGA 28470
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||| || || ||||| |||||| | ||||| ||||||| || | || || || ||
Sbjct 28471 ACACGCGAAGCGGAAGACCGTCACCGCGATGGACGTCGTCTACGCCCTCAAGCGCCAGGG 28530
Query 16672 CCG 16674
||
Sbjct 28531 ACG 28533
>seq410
Length=307304
Score = 132 bits (146), Expect = 8e-27
Identities = 168/226 (74%), Gaps = 4/226 (2%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| ||||||| ||||| || |||||||| || ||||||||||| || ||
Sbjct 307077 CGCCAAGCGCCATCGCAAGGTGCTTCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 307136
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||||||||| || || ||||||||||| ||||| || || | |||| || ||||
Sbjct 307137 CCGTCGTCTCGCCCGCCGTGGTGGAGTGAAGCGCATCAGCGGTCTCATCTACGAGGAGAC 307196
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCA-CTA-TAC- 16608
|| | ||| | ||| | ||||| ||| ||| |||| |||||| |||| ||| | |
Sbjct 307197 CCGCGGTGTCCTCAAGGTGTTCCTTGAGAACGTGATCCGTGATGCGGTCCACCTACTGCG 307256
Query 16609 CGAGCACGCTAAACGTAAGACTGTCACCTCCATGG-ATATCGTCTA 16653
|||||||| || | ||||| |||||| |||||| | |||||||
Sbjct 307257 AGAGCACGCCAAGAGAAAGACCGTCACCGCCATGGAACGTCGTCTA 307302
>seq163
Length=418455
Score = 116 bits (128), Expect = 6e-22
Identities = 166/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 16436 AAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCG 16494
||||| |||||| | | | | || || |||||| || ||||||||||| || |||||
Sbjct 70763 AAGCGATATCGCATGGTGT-TGCGCGACAACATCTCCGGCATCACCAAGCCGGCGATCCG 70821
Query 16495 TCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCG 16554
|||||| || ||||| | |||||| |||| | ||||| | |||||||| ||| ||||
Sbjct 70822 TCGTCTTGCCCGTCGAGCTGGAGTGGTGCGTATTTCTGGGCTCGTCTATGAGGAGGTTCG 70881
Query 16555 TGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCA 16614
| || | | | ||||||| || ||| || | || ||| ||| || ||| ||
Sbjct 70882 AGGCGTCCTCAGGGTCTTCCTGGAGGACGTAATTCGTGGAGCTGTCCTGTACTGCGAACA 70941
Query 16615 CGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACG 16665
|| || || | || |||||| | ||||| ||||||||||| ||||| ||
Sbjct 70942 TGCGAAGCGAACCACCGTCACCGCGATGGACATCGTCTATGCGTTGAAGCG 70992
>seq4710
Length=27489
Score = 89.7 bits (98), Expect = 8e-14
Identities = 75/92 (82%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||| ||||||| ||||| || |||||||| ||||||| || ||||| |||
Sbjct 1286 GCCAAGCGCCATCGCAAGGTGCTTCGTGACAACATCCAGGGAATCATCATTCCAGCCATC 1345
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCG 16524
|||||||| || |||||||||||||| |||||
Sbjct 1346 CGTCGTCTCGCCCGTCGTGGTGGAGTGAAGCG 1377
>seq5435
Length=18483
Score = 84.2 bits (92), Expect = 3e-12
Identities = 75/93 (81%), Gaps = 2/93 (2%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| || || ||||||| ||||| || |||||||| |||||| ||||||||| ||
Sbjct 8752 CGCCAAACGCCATCGCAAGGTGCTTCGTGACAACATCCAGGGAATC--CAAGCCAGCCAT 8695
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCG 16524
||||||||| || || ||||||||||| |||||
Sbjct 8694 CCGTCGTCTTGCACGCCGTGGTGGAGTGAAGCG 8662
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79053579382371
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |